Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0234 ATGTTTGATCACTTTATTGGTTTCAATTTTCAACACTCCAACGACATGGCGCATTCACTGATCCCTCTGTATATTGTAGTGGCTGTTCTAATACTTGTAACCATAGGTATTATCAGCATCATTCGTAGATTTGTGTATTGCCTCAAATGCATAAGCAAAATGATAAGCCAAAGTGGGTCAGACAAGACGCTGGTGAACACATTGAGGAACCTCCCGGGAACCCCCAAAGAGTACAGGTTTGAGGATCTGAAGATGGCAACCAACAACTTCGATGATGTCAAGAACAAGCTAGGACAAGGTGGTTTTGGTGCTGTTTACAGAGGAACACTTCCTAAGGACAAGACCCAGGTGGCTGTCAAGAAGTTCTTGAGGGACAAGATCTCTAGCACACATGATTTCCTGGCTGAGCTCACCATCATCAATTCTCTTCGTCACAAGAACCTTGTCCGCTTACTTGGATGGTGCCACAAGAATGGGATACTACTTTTAGTATATGAGTACATGCCTAATGGAAGCTTAGATCATCACCTTTTCTTCAAGGAAGGGACCAACAAAACCCCATTAAGTTGGCATCTAAGATACAAGATCATATCAGGGTTGGTTGCTGCTTTGAACTACCTACACAACGAATGCGATAAGAAAGTGATCCACAGAGATCTCAAAGCAAGTAACATCATGCTAGACTCTGACTTTAATGCACGCTTAGGCGATTTTGGTTTGGCTCGTGCAATTGAGAACAAGAAGACATCTTATGCAAATTTGCATGGTGTTCCTGGAACTATGGGCTACATTGCACCAGAGTGCTTATACATCGGAAAGGCCACGCGTGAATCCGACGTGTATGGATTCGGCGCAGTCTTGCTGGAGGTGGTGTGTGGACAGAGGCCATGGACAAAGAATTTGGACTATCAGTTTCTTGTGGATTGGGTTTGGCACTTGCACCGCCAGGGAAGGATACTAGAGGCAGCTGAAGAAGCAGAGAGGGTATTGAAATTGGGGTTAGCATGCTCTCACCCCATTGCAAGTGAGAGGCCTAAGATGCAGACAATTGTTCAGATCATATCAGGGTCAGTTCCTGTGCCTTATGTTCCACCCTTCAAGCCACCTTTTGTGTGGCCTGCCGCGGATCAAAGCGGCGCTTCCTCGGGTGATCCTTCTTCAAGTGAGCCTACAGCTGCAACTTTAGAGTACTCTCCCATTAACACAACCTTCTTTGCTCGTTAA 1224 0.4542 MFDHFIGFNFQHSNDMAHSLIPLYIVVAVLILVTIGIISIIRRFVYCLKCISKMISQSGSDKTLVNTLRNLPGTPKEYRFEDLKMATNNFDDVKNKLGQGGFGAVYRGTLPKDKTQVAVKKFLRDKISSTHDFLAELTIINSLRHKNLVRLLGWCHKNGILLLVYEYMPNGSLDHHLFFKEGTNKTPLSWHLRYKIISGLVAALNYLHNECDKKVIHRDLKASNIMLDSDFNARLGDFGLARAIENKKTSYANLHGVPGTMGYIAPECLYIGKATRESDVYGFGAVLLEVVCGQRPWTKNLDYQFLVDWVWHLHRQGRILEAAEEAERVLKLGLACSHPIASERPKMQTIVQIISGSVPVPYVPPFKPPFVWPAADQSGASSGDPSSSEPTAATLEYSPINTTFFAR* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0234 407 Pfam Protein tyrosine and serine/threonine kinase 94 353 IPR001245 GO:0004672|GO:0006468
Amo05g0234 407 PANTHER - 19 370 - -
Amo05g0234 407 Gene3D Phosphorylase Kinase; domain 1 75 167 - -
Amo05g0234 407 MobiDBLite consensus disorder prediction 379 393 - -
Amo05g0234 407 SUPERFAMILY Protein kinase-like (PK-like) 76 380 IPR011009 -
Amo05g0234 407 ProSiteProfiles Protein kinase domain profile. 91 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0234 407 Gene3D Transferase(Phosphotransferase) domain 1 168 358 - -
Amo05g0234 407 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.5-RELATED 19 370 - -
Amo05g0234 407 SMART serkin_6 91 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0234 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Amo05g0234 407 ProSitePatterns Protein kinases ATP-binding region signature. 97 121 IPR017441 GO:0005524
Amo05g0234 407 MobiDBLite consensus disorder prediction 374 393 - -
Amo05g0234 407 CDD STKc_IRAK 97 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0234 Amo-Chr5 3023477 3024981 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0234 75 368 Receptor kinase-like Gene Family AT3G53380 48.718 8.02e-95 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Amo05g0234 PK_Tyr_Ser-Thr 5.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0234 - - aip:107639957 696.041