Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0170 ATGGCAGATTCAATGTTGAGGGTGGAGCATATTGCAGGAAAAGGAAGAGGCCTTGTAGCCTCTCAAGCTCTCAAAGCTGGTCAAATTATCCTCACTGAACCCCCTCTCATTCTCTATTCTTCTTCCCCTCTTTCTTCTTCTTCTTCTTACTGTGATCACTGCTTCAGAACCCTGCTACCTACTACTCTTCTTTCATGTCCTTCTTGTCTCAACCACCATTTCTGCAGCAACAAGTGCCTCTCTACTTCCCTCAATTCCTCTCATTCCTCCACTATTTGCCAAGCACTCTTATCACTTCAACATTCACCACTGCTTCAACAACACCATCAAGTGCAAGCGCGTTTTGTTGTTGCTCTTCACAACCTTGCAGTTTCTGAGATCAACACTTTGCTTTCTCTACATGGCACCCCAGATGATTCTATCCTTCAAGATGCAAACTTTCTTCATGATCTAATCTCACCCCTTTTTCCCAACAAGAAGCTTAGTGTTGATCTTGTTGCTCAGGCTCTTGCAAAGGATAGGATCAATTCCTTCTGCTTGATGGAGCCTTATAACCCTAATGGACCTCAGAGATCAATTAAGGCATATGGGATATACCCAAAAGCCACAATGTTTAACCATGATTGTGTTCCCAATGCTTGCAGGTTTGATTATATGGACACTACTTATACTAATACTAATACTAATGACATTGTTATTAGGTTGATTAAGGATGTTGATGAAGGAGAAGAGATTTGCATAAGCTATTTTAGGATTGGGAGGGATTATGCTACAAGGAAGAAGATCTTGATGGAGGATTATGGGTTTGTTTGTGGGTGTGAGAGGTGCAAGGTTGAAGCAAGTTGGAGTAATAATGATGAGATTGATGATGATCATGATCATGTGCCACATGTAAGGTTTCTTAAGAAGTATGTTTGTAATATCAAGAATTGTGGTGGCACTTTGGCACCTCTTCCTCCAAAACATGATGCACCGTTTAATAATAATGTTCTTGAGTGTAATTTTTGTGGCAATTTCAAAATTGATGATGATGATGTTATATAA 1044 0.4004 MADSMLRVEHIAGKGRGLVASQALKAGQIILTEPPLILYSSSPLSSSSSYCDHCFRTLLPTTLLSCPSCLNHHFCSNKCLSTSLNSSHSSTICQALLSLQHSPLLQQHHQVQARFVVALHNLAVSEINTLLSLHGTPDDSILQDANFLHDLISPLFPNKKLSVDLVAQALAKDRINSFCLMEPYNPNGPQRSIKAYGIYPKATMFNHDCVPNACRFDYMDTTYTNTNTNDIVIRLIKDVDEGEEICISYFRIGRDYATRKKILMEDYGFVCGCERCKVEASWSNNDEIDDDHDHVPHVRFLKKYVCNIKNCGGTLAPLPPKHDAPFNNNVLECNFCGNFKIDDDDVI* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0170 347 Pfam SET domain 15 249 IPR001214 GO:0005515
Amo05g0170 347 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 3 342 - -
Amo05g0170 347 CDD SET_SMYD 176 276 - -
Amo05g0170 347 Gene3D - 50 102 - -
Amo05g0170 347 Gene3D - 104 177 - -
Amo05g0170 347 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 3 342 IPR044238 -
Amo05g0170 347 SMART set_7 4 256 IPR001214 GO:0005515
Amo05g0170 347 ProSiteProfiles SET domain profile. 1 250 IPR001214 GO:0005515
Amo05g0170 347 SUPERFAMILY SET domain 4 271 IPR046341 -
Amo05g0170 347 Gene3D SET domain 17 277 IPR046341 -
Amo05g0170 347 ProSitePatterns Zinc finger MYND-type signature. 51 93 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0170 Amo-Chr5 1956634 1958002 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo05g0170 SET 2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0170 - - gmx:100808530 438.728