Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0162 ATGGCTGAGGCTGTTGTCACTGTTTTGCTGGAGAACTTGAGCTCTCTCTTTCAAAAGGAACTTGGATCAATCATTGGCGTGGATGAAGAACTGAAGAAACTTTCTAGCACTTTCACTGCCATCCGCGCTGTTCTTGCTGATGCTGAGATGAAGCAGTTTACTGATTTGGCAATCAAAGACTGGCTGCGCAAGGTGCAAGATGCTGCTCTGCTGTTGGATGACATCCTTGACGAGTTCTCCACACATGATCTTCAAAATCAGAATCAGCAACAAAAGGGTGGCTGGTTTAACAAGATACACGCTTCTTGCCATTCTTCTTTCGGTCTGAAAAATGCCATGTTTCGTAGAAGAATGGCTAATAAGATGAAAAGGATGAGGGAGACATTACAAAACATTGCTGAAGAGAGGAAGATGTTTCATCTGTGTGAGAGAATTGCAACCACTGACAAGAAAGCTGAGTTGATGGAGTGGCGCCAAACCTCCTCTGTTATCACTCAACCTGAAATCTATGGAAGAGAGGAAGATAAGGAACGTGTTGTGCAAGCTTTGATTCAGACTTGTGATACTGAGCGTGCCGCGGTGCATACTATAGTTGGTCTTGGTGGTCTCGGAAAAACAACACTTGCTCAGCTGGTCTTCAATGATGACAGGATAACCATGCATTTTGACTTGAAGATTTGGGTTTGTGTCTCTGAGGACTTCAGTCTCAAGAGAATGATCAAGGCTATTTTGGATTCGGCTTCAGTGAGTGTTAGCGGCAATTTGGATATAGATCCACTTCAGAAGAAACTTCAACAGGCACTTCAAGGCAAACGATATTTACTTGTTCTGGACGACATCTGGAGTGAAGATCAAGAGAAGTGGGACAGATTGAAGAATTCACTTGTTGCATGTGGTTCAAAGGTGGGGTCTTCAGTTCTTGTTACTACTCGTCTCACAAAGGTTGCATCTATTATGGGTACGCTTCCTCCTCATGACTTGTCTTTTCTGTCGGATGAAGATTGTTGGTCATTGTTCAAACAACGGGCTTTCGGATTAGATGAAGGGGAAAACGTGGAGCTTGTTGCCATAGGGAAAGAGATTGTGAAAAAGTGTAAAGGGCTACCTCTTGCAGCAAAATCTCTTGGAGGCCTTCTGAGGTTTAAAAGAGAAGAGAGAGAATGGCTATATGTCAAGGACAATGAGATTTGGAATTTGCCACAAGATGAAAACTCTATCTTACCTGCTCTGAGATTAAGCTACTTGAACTTGCCATTAAAATCAAGGCAGTGTTTTTCTTTTTGTGCTATTTTCCCTAAAGATGCTGAGATTGAAAAGGATGAACTTGTTCATCTCTGGATGGCAAATGGCTTCGTCTCATCTGAAGGAACAATGGCAGTTGAAGATGTAGCTGAGGAGATAATTAGTGAACTATGCTGGGCATCATTTTTTCAAGACATTGAAAAAGATGATCTTGGCAAAGTTAGGGGCTTCAAAATACATGATCTACTTCATGACCTCGCCCAATATGTTATGGGTGATTTGTGTTGCATTGTAAATGATGAGATGCCCATTGAACATCCAAAAAGAATTCGCCATCTCACGATGGGGCCATGTGCTCGGAACCAAATCATTTCTGCTTGCACATTTAGATCCTTAAGGACATTTCACTTCCGACAGACAAATTGTGCTTTGGCTTCAACGAAGATATTGGGACCACTTGAATCTTTGCGAGCATTTGATTTGGGGTATGCAAATGTATTAAATATGTTGCATTTACCACTAATTACTCCCTTCAACCATCTAAGGTATCTAAATCTTAGAGGGACTTCAATTCAAACACTTCCGGAGTCCACAAGTAGCCTATGCAATTTGCAGGTTTTGAATCTCAGTTATTGTCAAAGCCTCCGGCGGTTGCCCCGCCATCTGAAATACCTAAAAGCTCTTCGACATCTCTACTTAAGGGGGTGCAGGTCGTTGGTTTACATGCCTAATGAGATTGGCCAGTTGAATTCTTTGAGAACCTTGAATATTTACATAGTAGGTAAGAAGAAAGGGCTAAGGTTAGATGAATTAGCACAATTATGCCTCAGAGGGGAACTCCACATTAAGAACCTGGAAAGAGTAACAAATGCAGCAGATGCCAAGGAAGCCAATTTAATGGGTAAGCAGCTAGACGTGTTGAAATTGTCATGGGGAAGAAATGAGCAATCTAAGTTGCTGCAAAATGTTGATCAGATTCTCGAAGCCCTGGAACCTCATCCAAAGCTCATAGATTTAGGGGTGGGAGGATACCAAGGTATGTATTTCCCACAATGGATGGGCAATCCTCACTTGAAGAATTTGTGTTCCATAAAACTTGTGGATTGCTGGTATAGTCAACAACTCCCCCTACTGGGGAGATTACCATCTCTAAAAATACTTGCAATATGTTGTATGCATAATTTGAGATATGTTGATGATGAATCTTATGATGGGGGAGTAGCCAGAGGATTCCAGTCTCTAATGTGTTTGGAATTGTGTTGCATGCCAAACTTGGAAGGGTTATCAAAAGAGGAAGGAGGTGACATGTTCCCAGGTCTTTCCAAAATGAATGTTATTGCATGTCCAAGATTGACATTCCCTGCCCTTCCATCTGTTAGAAAATTATGTATAGCAAAAGGACGGAGGAGATCTGGTCATGATTTATTCTCTAGAGAGATCTTATTATCTCAATGCCCTTCTACAACAAGGAGCCCCAACCAAGTTCAGATGGATTCAATTCATAGTCTCAGTTGTCTCGAAATCCTTGAAATTCATGATGATCAAGAGTTGGCTTCGTTTCCAAAGGGGACCCTTCAAGGTCTATGTCGCCTCAGACAACTCCATATTCATCACCAGAGCAAAATGGAAGTACTTCCACTTGAACTAGCTAACAACGCTGCCCTTCAAGAGTTGCATATAATTGGATGCCACAACTTGGAGTCATTAACAGATCAAGTGTTAACTGGGTTACAGTCGCTCCAAAAACTAAAAATTTTCAAATGTGATAAATTCAAAGGCTTATCCACAGGTTTTCAAAGTCTTAGTTCCCTCAAGGATCTAATCATTTCCTTCTGTCCACAAATGGTAGCATTAGCAGAAGATTTACAACACATGCCCCCCATGTTGCAATCAATAACTCTTCATGAGCTCAAAAATCTAGAATGTTTACCTTATTGTTGGGGTAGTACCATGACTCTTCAGTCACTATACATAGCCTGTTGCCCCAAGTTGAAGTCTCTTCCAATAAGCGTTGGATGGTTCAATGGTCTAAACAGTTTGACAGTTGTACATTGTCCTAGCATACAGAAACAATTCGAGAAGGAAACAGGGAAGGATTGGAAATGGATTAAGCACATTCCAAATGTTGATCTTGGAGAAAATTGTTGGGTGATTCCCACTATAGCAGCGAGTTACCCAGATCTGACTTTCTCTAATTGGGAAGGAATCTGA 3453 0.4147 MAEAVVTVLLENLSSLFQKELGSIIGVDEELKKLSSTFTAIRAVLADAEMKQFTDLAIKDWLRKVQDAALLLDDILDEFSTHDLQNQNQQQKGGWFNKIHASCHSSFGLKNAMFRRRMANKMKRMRETLQNIAEERKMFHLCERIATTDKKAELMEWRQTSSVITQPEIYGREEDKERVVQALIQTCDTERAAVHTIVGLGGLGKTTLAQLVFNDDRITMHFDLKIWVCVSEDFSLKRMIKAILDSASVSVSGNLDIDPLQKKLQQALQGKRYLLVLDDIWSEDQEKWDRLKNSLVACGSKVGSSVLVTTRLTKVASIMGTLPPHDLSFLSDEDCWSLFKQRAFGLDEGENVELVAIGKEIVKKCKGLPLAAKSLGGLLRFKREEREWLYVKDNEIWNLPQDENSILPALRLSYLNLPLKSRQCFSFCAIFPKDAEIEKDELVHLWMANGFVSSEGTMAVEDVAEEIISELCWASFFQDIEKDDLGKVRGFKIHDLLHDLAQYVMGDLCCIVNDEMPIEHPKRIRHLTMGPCARNQIISACTFRSLRTFHFRQTNCALASTKILGPLESLRAFDLGYANVLNMLHLPLITPFNHLRYLNLRGTSIQTLPESTSSLCNLQVLNLSYCQSLRRLPRHLKYLKALRHLYLRGCRSLVYMPNEIGQLNSLRTLNIYIVGKKKGLRLDELAQLCLRGELHIKNLERVTNAADAKEANLMGKQLDVLKLSWGRNEQSKLLQNVDQILEALEPHPKLIDLGVGGYQGMYFPQWMGNPHLKNLCSIKLVDCWYSQQLPLLGRLPSLKILAICCMHNLRYVDDESYDGGVARGFQSLMCLELCCMPNLEGLSKEEGGDMFPGLSKMNVIACPRLTFPALPSVRKLCIAKGRRRSGHDLFSREILLSQCPSTTRSPNQVQMDSIHSLSCLEILEIHDDQELASFPKGTLQGLCRLRQLHIHHQSKMEVLPLELANNAALQELHIIGCHNLESLTDQVLTGLQSLQKLKIFKCDKFKGLSTGFQSLSSLKDLIISFCPQMVALAEDLQHMPPMLQSITLHELKNLECLPYCWGSTMTLQSLYIACCPKLKSLPISVGWFNGLNSLTVVHCPSIQKQFEKETGKDWKWIKHIPNVDLGENCWVIPTIAASYPDLTFSNWEGI* 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0162 1150 PRINTS Disease resistance protein signature 194 209 - -
Amo05g0162 1150 PRINTS Disease resistance protein signature 267 281 - -
Amo05g0162 1150 PRINTS Disease resistance protein signature 365 379 - -
Amo05g0162 1150 PRINTS Disease resistance protein signature 613 629 - -
Amo05g0162 1150 SUPERFAMILY RNI-like 869 1126 - -
Amo05g0162 1150 CDD RX-CC_like 2 134 IPR038005 -
Amo05g0162 1150 Pfam Leucine rich repeat 594 651 IPR001611 GO:0005515
Amo05g0162 1150 PANTHER OS10G0130600 PROTEIN 6 1009 - -
Amo05g0162 1150 Pfam NB-ARC domain 172 414 IPR002182 GO:0043531
Amo05g0162 1150 SUPERFAMILY L domain-like 492 872 - -
Amo05g0162 1150 Coils Coil 115 135 - -
Amo05g0162 1150 Gene3D - 150 321 IPR027417 -
Amo05g0162 1150 Gene3D - 5 138 - -
Amo05g0162 1150 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 428 IPR027417 -
Amo05g0162 1150 Pfam Rx N-terminal domain 5 92 IPR041118 -
Amo05g0162 1150 PANTHER DISEASE RESISTANCE PROTEIN RP 6 1009 IPR044974 GO:0006952
Amo05g0162 1150 Gene3D - 413 503 IPR036388 -
Amo05g0162 1150 Gene3D - 329 412 IPR042197 -
Amo05g0162 1150 Gene3D Ribonuclease Inhibitor 518 695 IPR032675 -
Amo05g0162 1150 Gene3D Ribonuclease Inhibitor 890 1037 IPR032675 -
Amo05g0162 1150 Gene3D Ribonuclease Inhibitor 696 886 IPR032675 -
Amo05g0162 1150 Gene3D Ribonuclease Inhibitor 1038 1113 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0162 Amo-Chr5 1895071 1899627 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0162 567 671 WRKY Transcription Factor Family AT4G12020 34.286 2.29e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0162 - - ahf:112747488 2289.23