Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0159 ATGGGAAGTAGTTATGGTGGCGGAATTGGAGGAGGGGAAGGTGGTTATGGGGTGGTGATGAGTATGACGAGAGAGCCCAAGCCTAGGTTGAGGTGGACAACCGATCTTCATGATCGCTTTGTGGATGCCGTCACCAAACTTGGTGGCCCGGACAAAGCAACTCCCAAATCTGTTCTGAGGATAATGGGTTTGAAAGGCTTGACATTGTATCATTTGAAGAGCCACTTACAGAAATATAGACTTGGACAACAAGCTAAAAAACAAAATGAAGAACATCACAAAGAGAACAGTAGATATTCATATGTGAATTTCAGCAATAGCTCTTCAGAATTTAGCAGTAGTTTCAGAGGTGATAATGAAAGGGGAGAAATCCCAATAGCAGAGGCATTGAGACATCAAATTGAAGTCCAAAAGAGGTTGGAAGAACAGCTAGAGGTACAGAAGAAATTGCAGATGAGAATAGAGGCTCAAGGGAAGTATTTGCAAGCTGTGTTAGAGAAAGCTCAGAGGACACTTTCCATGGAAGGTTCAGGCAATAATCTAGAAGCATCAAGAGCTCAATTGACCGAATTCAACTCTGCCTTGTCCAATTTCATGGAAAACATGAACAACAAAGATAGCAAACAAAGCATATTAGACATGAATGATTTTTATAGTAAAGTCCATGGTTCAGGTTTCCATAATTACCATGAAGTAATAAGGAGAGAAAAAAATATTGATCAAAAGCCTAAAATTGAAGAGGGTTCAATTCAGTTTGACTTAAACAGCAAAAGTAGTTATGATCTTGTATCTGCAAGTGGTGATGGATCTGAAATTGAAGCCAAAATACTTTCATATAGGCTATGA 846 0.3936 MGSSYGGGIGGGEGGYGVVMSMTREPKPRLRWTTDLHDRFVDAVTKLGGPDKATPKSVLRIMGLKGLTLYHLKSHLQKYRLGQQAKKQNEEHHKENSRYSYVNFSNSSSEFSSSFRGDNERGEIPIAEALRHQIEVQKRLEEQLEVQKKLQMRIEAQGKYLQAVLEKAQRTLSMEGSGNNLEASRAQLTEFNSALSNFMENMNNKDSKQSILDMNDFYSKVHGSGFHNYHEVIRREKNIDQKPKIEEGSIQFDLNSKSSYDLVSASGDGSEIEAKILSYRL* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0159 281 SUPERFAMILY Homeodomain-like 26 84 IPR009057 -
Amo05g0159 281 Pfam MYB-CC type transfactor, LHEQLE motif 125 171 IPR025756 -
Amo05g0159 281 Gene3D - 26 84 - -
Amo05g0159 281 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 14 266 IPR044848 GO:0003700
Amo05g0159 281 Pfam Myb-like DNA-binding domain 30 80 IPR001005 -
Amo05g0159 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 84 IPR017930 -
Amo05g0159 281 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 27 82 IPR006447 GO:0003677
Amo05g0159 281 Coils Coil 127 157 - -
Amo05g0159 281 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 14 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0159 Amo-Chr5 1871182 1875094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0159 1 197 G2-like Transcription Factor Family AT3G24120 50.746 5.27e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo05g0159 Myb_DNA-binding 6.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0159 - - adu:107487134 488.034