Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0139 ATGGGTTACGAAGACGATCCGTATCGCGATGAGGACGGAGAACCCTTGATGGATTATGACGACATGCAATCCGATCCCGAGCCGGAGCCCCACCACGACGATGCTCTCCTCGATGATTACGAGGACGAAGGGGACGGTGGCGATTGGCGACGCCGCGAGCGCTCGCAGACTCCGGTCTACGATCACGATTCGTCCAAGTCGAAGCCCAGGAAGAGGCTCGTTAAGAAGGGCGACACCGGGAGGCAGTCGGTGGCGCCGGAGCTCGAAGACGAGGTGGCGGAGGAGGAGTATGACGTCGGGGCGAGGTTCGCGAGGGAGGGATCGGAGGAAGGGAGGAAGAGGAAGAAGGGGAAGGAGGGTGGAAGTGGGAAGAAGGAGAAGAGGCTTAAGGGGGAGAAGAGGTTTGCGAGTGGCGGAAGTGGGAAGAGCGGGTCCAAATTTGGGGGATCTAAGAAAGCGTTTGGTGGAAAAGGAGGCAAAGATCATGACGGTGAAGTTAAGGAGATGTGGGATACCATTGCTGGCGGCGATTCTGAGGATGATCACGATGGTGTTAGGAACGTGGATGATGACAACTTTATAGATGACACTGGGGTGGAAGCTGGTGGTTACTATGGCAGTGATGAACCTCGTTCTCCTGGTGATGCTCCCCAGGCAGAGGAAGGTGAAGAGGACGATGAAATTAAGGATCTTTTCAAGGTAGGTAAGAAAAAGAAGAAGAATGAGAGAAGTCCTGCGGAAATAGCTTTATTAGTTGAGAACGTCATGGCTGAGCTTGAGGTCACAGCTGAAGAGGATGCTGAACTTAATAGACAGGGGAAGCCTGCCATTAATAAACTAAAGAAGTTGGATCTTCTAACAGAAGTCCTCTCGAAGAAACAGCTCCAATTAGAGTTTTTGGACCATGGAGTACTAACTTTGTTGAAGAATTGGCTTGAGCCACTTCCTGATGGAAGCTTGCCAAATATTAACATACGCACAGCAATTTTGACTATTTTAAATGATTTTCCTATTGACCTAGAGCAGTATGATAGAAGAGAACAGCTGAAGAAGAGTGGTCTTGGGAAGGTGATCATGTTCTTATCGAAGTCCGACGAAGAAATCAATGTAAATAGAAAACTAGCTAAGGAACTGGTTGACAAATGGAGTCGACCCATATTTAATAAGAGTACACGGTTTGAGGACATGAGAAATGCTGAGGAGGACAGGATTCCTTTCAGGAGGCCAACCGTTAAAAAGCCGGCAAATAAAGCAGCAGGGATGGAATCTAGAGATGGTGATCTTGATTTGGAATTTTCACAGCCTAGGTCTGGACAGTCTTCTTCAAGGCAACATGCATCAAGGCCAGAAGCAACACCTTTGGATTTTGTGATCCGTCCCCAGTCTAAAATTGATCCAGAAGAAGTTAGAGCGCGAGCAAAAGCTGCTGCACAAGATCAGCAGAGAATGAAGATGAATAAGAAGTTGCAGCAGTTGAGGGCACCAAAGAAAAAGCAGCTTCAAGCTACAAAACTAAGTGTGGAAGGTCGTGGCATGGTCAAATATTTGTAG 1551 0.4823 MGYEDDPYRDEDGEPLMDYDDMQSDPEPEPHHDDALLDDYEDEGDGGDWRRRERSQTPVYDHDSSKSKPRKRLVKKGDTGRQSVAPELEDEVAEEEYDVGARFAREGSEEGRKRKKGKEGGSGKKEKRLKGEKRFASGGSGKSGSKFGGSKKAFGGKGGKDHDGEVKEMWDTIAGGDSEDDHDGVRNVDDDNFIDDTGVEAGGYYGSDEPRSPGDAPQAEEGEEDDEIKDLFKVGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLDLLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTAILTILNDFPIDLEQYDRREQLKKSGLGKVIMFLSKSDEEINVNRKLAKELVDKWSRPIFNKSTRFEDMRNAEEDRIPFRRPTVKKPANKAAGMESRDGDLDLEFSQPRSGQSSSRQHASRPEATPLDFVIRPQSKIDPEEVRARAKAAAQDQQRMKMNKKLQQLRAPKKKQLQATKLSVEGRGMVKYL* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0139 516 PANTHER PROTEIN IWS1 HOMOLOG 1 1 516 IPR044204 GO:0009742|GO:0032784
Amo05g0139 516 Pfam TFIIS helical bundle-like domain 332 386 IPR017923 -
Amo05g0139 516 MobiDBLite consensus disorder prediction 44 68 - -
Amo05g0139 516 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 245 392 IPR035441 -
Amo05g0139 516 PANTHER PROTEIN IWS1 HOMOLOG 1 1 516 - -
Amo05g0139 516 MobiDBLite consensus disorder prediction 155 193 - -
Amo05g0139 516 MobiDBLite consensus disorder prediction 1 23 - -
Amo05g0139 516 MobiDBLite consensus disorder prediction 461 477 - -
Amo05g0139 516 Coils Coil 252 272 - -
Amo05g0139 516 MobiDBLite consensus disorder prediction 400 502 - -
Amo05g0139 516 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 301 390 IPR035441 -
Amo05g0139 516 MobiDBLite consensus disorder prediction 97 135 - -
Amo05g0139 516 MobiDBLite consensus disorder prediction 433 448 - -
Amo05g0139 516 ProSiteProfiles TFIIS N-terminal domain profile. 306 389 IPR017923 -
Amo05g0139 516 MobiDBLite consensus disorder prediction 1 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0139 Amo-Chr5 1694324 1699120 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Amo05g0139 Med26 3.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0139 K17498 - gmx:100801805 739.954