Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0124 ATGGTAGAAATGTATAACTTGTTCCTTTCATTATGTTTGGTTGCCATGATACCAATCTTGAAAGCTAATATCTTAGAGAATACAACATACCTGAATGATTTTGATGAGGAATATTGGAAGGAAAGAGCAGCAATTGCTGAAAAAGATAACAGAGAAGCATATTTCTTAAATCCATACGAGATTTCTGGCAACTTCAGTTCTACTGTTTTAGAAGACATAGTTGGAAACAAACATGCGAGAAGAAGCTTGAAGGGTAAAAATGCAAGAGTTCCATGCATGGCAACAAACAACATTGATAGATGTTGGAGGTGTGATCCTAATTGGGCAAAGTATCGTCAAAAGCTTGCAAATTGTGTTCAAGGTTTTGGAAAAAACACAATTGGTGGAAAAAATGGTCCAATTTATATAGTTACTGATTCCTCAGACAATGACATGGTTAATCCAAAACCAGGTACTCTTCGCCATGCAGTCACAAGAACAGGGCCATTATGGATTATCTTTGCACGTAGCATGTTTATTAGACTCAACCAAGAACTCATAATGACTAGTGACAAAACTATTGATGGAAGAGGAGTTGATGTTCACATTACTAGAGGTGCAGGAATCACCATTCAGAACATTAAAAATGTGATTATTCATGGAATTAAGATTTATAATATTGTTCCTGGTACCGGTGGACTTATCAGAGATTCTGAGACTCATTTTGGTCAAAGGTTAAGCACAGAAGGTGATGGAATCTCTATTTTTGGCTCTAGCAATATTTGGATTGACCATGTTTCTATGAGAAAATGTGCAGATGGTCTCATTGATGCCATTATGGGATCTACAGCCATTACCATTTCTAATAGTCATTTCACAGATCAAAATCACGTTATCCTGTTTGGTGGGAGGGAAGAGCACACAATTGATAAGATGATGCAAGTGACTGTAGCTTTCAATCATTTTGGGAAGAGATTGCTGCAAAGAATGCCAAGGTGCAGATTTGGATTTTTCCATATTGCTAACAATGATTATACTCATTGGCAAATGTATGCCATTGGTGGTAACAAGAATCCAACTATTATTAGTGAGGGCAATCGATTTTGGGCTCCGGATAATATTCATGCTAAAGAGGTAACAAAGAGAGTGGACGCAAATATTGGAGAATGGAAATCATGGCAGTGGAGATCAATAAATGATGAGTTATTGAATGGAGCATTTTTCGTACAATCGGGATCTGAGTTGGTAAATTGGTCAAACAAAAATAAGATTGCATCAAAACCTGGAAAATATGTCGCACAACTTACTCGCTTTGCTGGCACCCTTAGATGTAGAGTTGGTAAACCTTGTTAG 1332 0.3709 MVEMYNLFLSLCLVAMIPILKANILENTTYLNDFDEEYWKERAAIAEKDNREAYFLNPYEISGNFSSTVLEDIVGNKHARRSLKGKNARVPCMATNNIDRCWRCDPNWAKYRQKLANCVQGFGKNTIGGKNGPIYIVTDSSDNDMVNPKPGTLRHAVTRTGPLWIIFARSMFIRLNQELIMTSDKTIDGRGVDVHITRGAGITIQNIKNVIIHGIKIYNIVPGTGGLIRDSETHFGQRLSTEGDGISIFGSSNIWIDHVSMRKCADGLIDAIMGSTAITISNSHFTDQNHVILFGGREEHTIDKMMQVTVAFNHFGKRLLQRMPRCRFGFFHIANNDYTHWQMYAIGGNKNPTIISEGNRFWAPDNIHAKEVTKRVDANIGEWKSWQWRSINDELLNGAFFVQSGSELVNWSNKNKIASKPGKYVAQLTRFAGTLRCRVGKPC* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0124 443 SMART amb_all 170 367 IPR002022 -
Amo05g0124 443 PRINTS Pollen allergen Amb family signature 118 135 IPR018082 -
Amo05g0124 443 PRINTS Pollen allergen Amb family signature 142 167 IPR018082 -
Amo05g0124 443 PRINTS Pollen allergen Amb family signature 178 194 IPR018082 -
Amo05g0124 443 PRINTS Pollen allergen Amb family signature 242 263 IPR018082 -
Amo05g0124 443 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Amo05g0124 443 PRINTS Pollen allergen Amb family signature 344 363 IPR018082 -
Amo05g0124 443 PRINTS Pollen allergen Amb family signature 386 410 IPR018082 -
Amo05g0124 443 PANTHER PECTATE LYASE 18-RELATED 7 443 IPR045032 GO:0030570
Amo05g0124 443 Pfam Pectate lyase, N terminus 33 83 IPR007524 GO:0030570
Amo05g0124 443 Gene3D - 95 436 IPR012334 -
Amo05g0124 443 Pfam Pectate lyase 180 361 IPR002022 -
Amo05g0124 443 PANTHER PECTATE LYASE 7 443 - -
Amo05g0124 443 SUPERFAMILY Pectin lyase-like 86 437 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0124 Amo-Chr5 1468503 1470358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0124 7 443 Polysaccharide Lyase AT1G14420 56.923 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0124 K01728 - gmx:100796307 634.795