Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0115 ATGTATGGGGATTGCCAAGTAATGTCTACAATGGGAGGCAACGTAGTTGTAAACTCATCAGAAACACTTTTCTCTTCTCCGATCCAAAACAACAGCTTCACCTTCATGCCTACCATGCATTTTCATCACTCTTTTCCCACCATGAAGGAAGAAGACGGGATCTTGAGAGGGAAGGAAGAGATCATGGAGAGCGGTTCAGGGAGCGAACAAGTTGAAGACAAGTCAGGGAATGAGCAAGAGACTGATCAACAACAGCCTCAGAATAAGAAGAAACGTTACCACAGGCACACTGCACGCCAGATCCATGAGATGGAAGCTTTGTTCAAGGAATGTCAACACCCGGATGATAAGCAACGGCTGAAACTTAGCCATGAACTCGGCCTTAAACCGCGCCAGGTTAAGTTCTGGTTCCAGAACCGCCGAACGCAGATGAAGGCACAACAAGATCGAGCTGAAAATGTGATTCTAAGAGCGGAGAATGAGACTCTAAAGAATGAGAATTATCGTCTACAAGCATCACTGCGTAGTGTTATATGTCCCAATTGTGGTGGTCCAGGAATAATGGGAGCTGATCTTGGCTTGGATGAACAACAACTTCGCATTGAAAATGCCAGGTTAAGAGAGGAGTTGGAACGTGTGTGCTGCCTGACATCAAGATACAGCGGGCGTCCAATCCAAACAATGGCACCAGCACCAGCACTGATGGCCCCATCACTGGACTTGGACATGAACATCTACCCAAGGCACTACGTTGATCCCACCATTCCCCCGTGCACCGAGATGATTCCTGTTCCAATGCTTCCCCCGGAAGCTTCTCAGTTCCCGGAGGGCGGTCTCTTAATGGAAGAGGAGAAGTCTCTGGCCATGGACCTTGCCGCCTCTTCCATGGCCGAGCTTGTCAAGATGTGCCATGCTAACGAGCCGCTTTGGATCCGTGGCTGCGACGGCGATGGGGAAGTTCTTAACTTTGAGGAGCACGGCAGGCTGTTCCCGTGGCCGTTGAATCTCAAGCACCGGACTGAAGCTAGCCGTGACACCGCTGTTGTCATCATGAATAGTGTCACTCTTGTTGATGCCTTCCTCGATGCTAACAAGTGGATGGAACTGTTTCCCACAATTGTTTCTAGAGCAAAAACGGTGCAAATAATATCTTCAAATGCTTCTGGCCATGCAAGCGGGTCTCTGCAGCTGATGTATGCGGAATTCCAAGTTCTTTCTCCATTGGTATCGACTCGTGAGACTCATTTCCTTCGGTACTGTCAACATAACGCTGAGGAGGGAACGTGGGGCATTGTTGACTTCCCAATCGATAGCTTTCAGCAGAACCTGCACCCTTCTTATCCCAGATACTGCAGGCGACCCTCTGGCTGTCTCATTCAAGATATGCCAAATGGATATTCAAGGGTAACATGGATTGAGCATGCAGAAGTAGAAGAGAAACCCGTGCATCAGATATTCAGCAACTATGTTTACAGTGGTATGGCTTTTGGTGCACAGCGGTGGTTGGGTGTTTTGCAGAGACAATGTGAGAGGGTTGCAAGCCTCATGGCCAGAAACATTTCAGATCTTGGAGTGATACACTCACCAGAAGCTAGAAAGAACTTGATGAAACTTGCACAGAGGATGATACGAACGTTCAGCCTCAACATGAGCACGTCAAGTGGTCAATCATGGACTGCAATATCAGATTCCCCTGAAGATACCGTTAGAATCACCACCAGGAAGATCACAGAGCCTGGTCAACCCAACGGTGTCATTCTGGGTGCTGTTTCAACCACTTGGCTTCCCTATTCCCACACCAAGGTCTTCGATCTGTTACGCGATGAACGCCACAGATCTCAGATGGATGCTCTTTCCAATGGGAATTCACTCAATGAAGTTGCTCACATTGCAAATGGTTCCCATCCAGGAAACTGCATTTCCCTTCTCCGCATCAATGTTGCGAGCAACTCATCGCAGAACGTGGAGCTAATGCTGCAAGAGAGCTGTACGGACCAATCAGGGAGTGTGGTGGTGTACACTACCATTGCTGTGGACTCCATTCAGGTAGCCATGAGCGGAGAGGATCCTTCATGCATTGCGCTTCTCCCACAAGGCTTCATTATAACGCCAATGCCGCCATCAAGCAACAACTCATCCTCTTCTGAAGCTCTTATCAATGAACATGGCTGCCTCCTCACCGTTGGCCTCCAGATTCTAGCTAGCACCATTCCCTCCGCCAAGCTCAACCTGTCCAGCGTCACCTCCATCACCAACCACCTCTGCAGCACCGTGCACCAGATCGAAGCCTCTCTTTGCAACACCGCCAACAATGAGCCAACCACCACCACTGCACCTCCCAAAACAGTGAACTAA 2355 0.4926 MYGDCQVMSTMGGNVVVNSSETLFSSPIQNNSFTFMPTMHFHHSFPTMKEEDGILRGKEEIMESGSGSEQVEDKSGNEQETDQQQPQNKKKRYHRHTARQIHEMEALFKECQHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMKAQQDRAENVILRAENETLKNENYRLQASLRSVICPNCGGPGIMGADLGLDEQQLRIENARLREELERVCCLTSRYSGRPIQTMAPAPALMAPSLDLDMNIYPRHYVDPTIPPCTEMIPVPMLPPEASQFPEGGLLMEEEKSLAMDLAASSMAELVKMCHANEPLWIRGCDGDGEVLNFEEHGRLFPWPLNLKHRTEASRDTAVVIMNSVTLVDAFLDANKWMELFPTIVSRAKTVQIISSNASGHASGSLQLMYAEFQVLSPLVSTRETHFLRYCQHNAEEGTWGIVDFPIDSFQQNLHPSYPRYCRRPSGCLIQDMPNGYSRVTWIEHAEVEEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIHSPEARKNLMKLAQRMIRTFSLNMSTSSGQSWTAISDSPEDTVRITTRKITEPGQPNGVILGAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSVVVYTTIAVDSIQVAMSGEDPSCIALLPQGFIITPMPPSSNNSSSSEALINEHGCLLTVGLQILASTIPSAKLNLSSVTSITNHLCSTVHQIEASLCNTANNEPTTTTAPPKTVN* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0115 784 CDD START_ArGLABRA2_like 285 510 - -
Amo05g0115 784 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Amo05g0115 784 SUPERFAMILY Bet v1-like 529 762 - -
Amo05g0115 784 PANTHER - 77 771 - -
Amo05g0115 784 SMART START_1 290 511 IPR002913 GO:0008289
Amo05g0115 784 Pfam START domain 291 511 IPR002913 GO:0008289
Amo05g0115 784 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 77 771 IPR042160 -
Amo05g0115 784 CDD homeodomain 90 148 IPR001356 GO:0003677
Amo05g0115 784 Pfam Homeodomain 90 145 IPR001356 GO:0003677
Amo05g0115 784 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Amo05g0115 784 Gene3D - 74 159 - -
Amo05g0115 784 ProSiteProfiles START domain profile. 281 514 IPR002913 GO:0008289
Amo05g0115 784 MobiDBLite consensus disorder prediction 62 88 - -
Amo05g0115 784 Gene3D - 337 500 IPR023393 -
Amo05g0115 784 SUPERFAMILY Bet v1-like 282 513 - -
Amo05g0115 784 SUPERFAMILY Homeodomain-like 77 148 IPR009057 -
Amo05g0115 784 MobiDBLite consensus disorder prediction 62 96 - -
Amo05g0115 784 SMART HOX_1 88 151 IPR001356 GO:0003677
Amo05g0115 784 Coils Coil 141 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0115 Amo-Chr5 1300237 1305656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0115 28 768 Homeobox Transcription Factor Family AT5G46880 58.595 0.0 864
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo05g0115 START 1.7e-39 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0115 - - gmx:100812829 1280.39