Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0110 ATGAGCTTTCAAGACATCGAGGCCGGCCGGCAGTTCGCTTCCCGCCGAGGCAACATCAACGGCAAGCAAGACCCCACTCAGGCGGTGGCTGCCGGAATTTTCCAGATCAACACTGCGGTCTCCACCTTCCAGAGGCTCGTTAACACCCTAGGAACCCCCAAAGACACCCCCGAGCTCCGCGAGAAGCTGCACAAGACAAGGCTGCACATTGGACAATTGGTGAAGGACACTTCAGCGAAGCTTAAACAAGCTAGTGAAATTGATCACCAATCTAATATCAATGCAAGCAAGAAGATAGCAGATGCTAAACTCGCGAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCACAGCGTCTTGCGGCAGAGAGGGAAACAGCTTACACCCCATTTGTTCCACAAGCAGCTCCATCCAGCTATACAGCTAATGAAGCAGATGCTAATTCTGGTAAGATGCCAGAACAGCGTGCCCTTCTTGTGGAATCCAGAAGGCAGGAGGTGGTGTTTTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAAGAAAGAGATCAAGGCATTCAAGAAATTCAGCAGCAAATTGGTGAAGTAAATGAAATTTTTAAAGACCTTGCTGTGCTTGTGCATGAACAAGGAGCTATGATTGATGATATTGGGTCCAACATTGAGCATTCCCATGCAGCAACTGCACAAGCAAGATCTCAACTTGCTAAAGCTTCAAAGACTCAAAGATCAAATTCTTCTTTGACATGCTTGCTTTTGGTGATATTTGGAATTGTGCTTCTAATTGTCATCGTTGTTCTGGCTGCTTAG 819 0.4603 MSFQDIEAGRQFASRRGNINGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHQSNINASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAAPSSYTANEADANSGKMPEQRALLVESRRQEVVFLDNEIAFNEAIIEERDQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEHSHAATAQARSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIVVLAA* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0110 272 SMART tSNARE_6 174 241 IPR000727 -
Amo05g0110 272 Gene3D - 173 272 - -
Amo05g0110 272 PANTHER SYNTAXIN 2 271 IPR045242 -
Amo05g0110 272 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Amo05g0110 272 PANTHER SYNTAXIN OF PLANTS PROTEIN 2 271 - -
Amo05g0110 272 CDD SynN 23 145 IPR006011 GO:0016020
Amo05g0110 272 Pfam SNARE domain 216 267 IPR000727 -
Amo05g0110 272 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 179 241 IPR000727 -
Amo05g0110 272 ProSitePatterns Syntaxin / epimorphin family signature. 185 224 IPR006012 GO:0005484|GO:0006886|GO:0016020
Amo05g0110 272 SMART SynN_4 14 127 IPR006011 GO:0016020
Amo05g0110 272 SUPERFAMILY t-snare proteins 23 234 IPR010989 GO:0016020|GO:0016192
Amo05g0110 272 Gene3D - 17 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0110 Amo-Chr5 1242787 1248823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0110 1 260 SNARE and Associated Proteins AT5G46860 78.927 8.04e-149 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0110 - K08488 gmx:547656 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0110 05 1242787 1248823 Amo01g1072 01 13981042 13985846 PCT
Amo01g1072 01 13981042 13985846 Amo05g0110 05 1242787 1248823 PCT