Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0108 ATGACATTGGTTATCAGAGAAAGGAGGCACCAACAAGCTCTAAGGCTCTCTTTGCCGCAAAGAAACCCTCCTTCGTTATCGTCGTCGTCGTCGTCATCGTCGTCGTCACCACTTCCACATGCATCAGTATCATTATCAGGATCTTCTTCATCTTCCTCCTCGGTCCTAGTTAACCTCTCAGACCTCGAGAAGCTCGCGGTTCTTGGCCATGGAAACGATGGCATAGTGTACAAGGTTCGACACAAGAAGAGTAATTGCTTCTACGCATTGAAAGTGATACGCTCCAACCCTATAATCGGCATTGATGGAAGCCCTAACCACGTGGAGGCAGAGATTCTGAAGAAGATGGATTCGCCGTACGTAGTGAAGTGTCATGCGGTTTTCGACAACGGTTCTTGCAGTGATAATGGTGTAAGCTTTGTTATGGAGTACATGGGTGGAGGGTCGTTGTATGATATCTTGAAACATCATCGTACACTGTCGGAGGATGTGATCTCTGATGTTGCGAAGCGCGTGTTGGAAGGGCTTAACTATTTGCATGCCATGCACGTTGTGCACAGAGACATTAAGCCCTCGAACTTGCTCGTGAATGAGAAGGGTGAGGTGAAGATAGCGGATTTTGGGGTGAGCCACGTGGTGGTGGAAGAGAAAGAGAGTAATGGCGGTGGTGGTGATTATGATCTTCATCACTATGGCAATGCAGGCACGTGTGCATACATGAGTCCTGAAAGGATTGATCCTGAGAGTTGGAGAGGAGGTGGTGGTGGGGATGGTTTTGCCGGCGATGTTTGGTCGATGGGGGTGGTGGTTTTGGAGTGCTTTCTGGGGCATTTTCCGTTGATCAGGGCGGAGCAGAGACCGGACTGGGCAACACTGATGTGTGCCATTTGCTTTGGGGAAAAGGTGGAGATGCCGGAGACGGCGTCGCCGGAGTTCAAGAGCTTTGTACTGAGGTGTCTTGAGAAGGATTGGAGGAAGAGGGCAACAGTGAAGGAGCTTCTCCAACACCCTTTTGTTAATAGAGGAGGGTGTTGCAATTTCAGTAGAAAAAGGCTTGGTGATTATGTTGTTCTTCAGGGGTGA 1083 0.4931 MTLVIRERRHQQALRLSLPQRNPPSLSSSSSSSSSSPLPHASVSLSGSSSSSSSVLVNLSDLEKLAVLGHGNDGIVYKVRHKKSNCFYALKVIRSNPIIGIDGSPNHVEAEILKKMDSPYVVKCHAVFDNGSCSDNGVSFVMEYMGGGSLYDILKHHRTLSEDVISDVAKRVLEGLNYLHAMHVVHRDIKPSNLLVNEKGEVKIADFGVSHVVVEEKESNGGGGDYDLHHYGNAGTCAYMSPERIDPESWRGGGGGDGFAGDVWSMGVVVLECFLGHFPLIRAEQRPDWATLMCAICFGEKVEMPETASPEFKSFVLRCLEKDWRKRATVKELLQHPFVNRGGCCNFSRKRLGDYVVLQG* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0108 360 MobiDBLite consensus disorder prediction 15 50 - -
Amo05g0108 360 SMART serkin_6 62 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0108 360 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 10-LIKE 5 341 - -
Amo05g0108 360 ProSiteProfiles Protein kinase domain profile. 62 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0108 360 Gene3D Transferase(Phosphotransferase) domain 1 57 353 - -
Amo05g0108 360 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 5 341 IPR045269 GO:0004674|GO:0006914
Amo05g0108 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Amo05g0108 360 Pfam Protein kinase domain 63 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0108 360 SUPERFAMILY Protein kinase-like (PK-like) 59 341 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0108 Amo-Chr5 1236988 1238070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0108 1 340 MAP Kinase Kinase Gene Family AT1G32320 52.353 5.02e-110 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Amo05g0108 Pkinase 1.8e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0108 - K20604 adu:107487017 685.256