Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0106 ATGGATGCGAGTACCAGCGGTGGAGATGGCGGTGGCGGAGGAAGCACTAACGGGGCCACGCCGGCGCCGGCGCCGGTACCGATTCCGAACGCGAACGCGCCGCCGCCGTTCCTGAGCAAGACGTACGACATGGTGGACGACCCTTCAACGGACGCAATCGTGTCGTGGAGCGCTACGAACAACAGCTTTGTGGTTTGGAACCCACCGGAATTCGCGAGAGACCTTTTGCCGAAATACTTCAAGCACAACAACTTTTCCAGCTTCGTTAGACAGCTCAACACTTATGGTTTTAGGAAGGTTGATCCAGATCGATGGGAATTTGCAAATGAGGGCTTTTTGAGGGGCCAAAAGCACTTGCTTAGGAATATAACACGAAGAAAACCTGCCCATGGTCATCATCAACAATCTCAGCAATCACATGTACAAAATTCATCAGTAGGGGCATGCGTAGAAGTTGGTAAGTTTGGGCTCGAGGAAGAGGTTGAGAGGCTTAAAAGAGACAAAAATGTGCTCATGCAGGAACTTGTCAGGCTGAAGCAGCAACAACAGACCACTGATGACCAACTGCAAACAATGGTTCAACGCCTTCAGGGCATGGAGCAAAGACAACAACAAATGATGTCATTCCTTGCTAAAGCCGTACAGAGCCCTGGCTTCTTTGCGCAGTTCGTACAACAGCAAAATGAGAATAATAGGCGTATAAGTGAAGTCAACAAAAAGCGCCGGCTCAAGCAAGAAGGTATTGCTGAAACTGACTCTGCTGCTGCTCCTGATGGGCAAATTGTTAAGTATCAACCTCTGATTAACGATTCAGCAAAAGCAATGCTAAGACAGATCATGAAATGGGATACTTCTCGAGCAGAATCTTTTAGTAAAGACCCTGATAATTACCTGATTGGTGATGGTTCGTCATCCTCATCTGGTGCGATGGACAGTGGCAGCTCCTCAAGCTGGACCTCTGGAGTAACACTTCAGGAGGTCCCGCCAACTTCAGTGCAGTCTTCTCATGTTCCAATTACTCCGGGGGCTCCAGGGCATGTTCCCTCAGCTGCCAAACCTGAAATTCAATCTTTACCACAGGCTGGAGTTCCTGAAAAGGTTACAAGGGTTGGAGCATCTGACATACCTTCTATCCATGTTCCTCAAGCAGATGTCATCATGCCTGATCTTGCACCAATAGATGAAATAGAGTCTGGAAGTATGCTTGGTATTCCGGAAGATAATTATATGGCTCCTGAAGCTGGTGATGAGGGATTTATGGATCCTGATTCATTGGGGGTTAGTGGATCATTTCCCATTGATTTTGAAGGAATTTCACCTGATGCGGACCTTGATGACTTCTTAGGAAATCCATCTATTTGGGATGACCTTTTGCAAACCCCAGTGCAAGAGGATACTGAGACTGATATTGAAGCTTCCAAAGTTAATGAGGTGCAACCAGCCGAAAATGGTTGGGATAAAACTCAACATTTGGATCAACTTACAAAGCAGATGGGTCATCTTTCTTCTGAAGCAAAATAG 1521 0.4701 MDASTSGGDGGGGGSTNGATPAPAPVPIPNANAPPPFLSKTYDMVDDPSTDAIVSWSATNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRNITRRKPAHGHHQQSQQSHVQNSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLKQQQQTTDDQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNENNRRISEVNKKRRLKQEGIAETDSAAAPDGQIVKYQPLINDSAKAMLRQIMKWDTSRAESFSKDPDNYLIGDGSSSSSGAMDSGSSSSWTSGVTLQEVPPTSVQSSHVPITPGAPGHVPSAAKPEIQSLPQAGVPEKVTRVGASDIPSIHVPQADVIMPDLAPIDEIESGSMLGIPEDNYMAPEAGDEGFMDPDSLGVSGSFPIDFEGISPDADLDDFLGNPSIWDDLLQTPVQEDTETDIEASKVNEVQPAENGWDKTQHLDQLTKQMGHLSSEAK* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0106 506 SUPERFAMILY "Winged helix" DNA-binding domain 32 126 IPR036390 -
Amo05g0106 506 MobiDBLite consensus disorder prediction 1 35 - -
Amo05g0106 506 Coils Coil 154 181 - -
Amo05g0106 506 ProSitePatterns HSF-type DNA-binding domain signature. 76 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo05g0106 506 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 493 IPR027725 -
Amo05g0106 506 MobiDBLite consensus disorder prediction 301 351 - -
Amo05g0106 506 PRINTS Heat shock factor (HSF) domain signature 37 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo05g0106 506 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo05g0106 506 PRINTS Heat shock factor (HSF) domain signature 88 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo05g0106 506 Gene3D - 30 127 IPR036388 -
Amo05g0106 506 SMART hsfneu3 33 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo05g0106 506 MobiDBLite consensus disorder prediction 301 338 - -
Amo05g0106 506 Pfam HSF-type DNA-binding 37 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo05g0106 506 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 10 493 - -
Amo05g0106 506 Coils Coil 491 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0106 Amo-Chr5 1218473 1222787 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0106 1 505 HSF AT1G32330 52.642 4.38e-172 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Amo05g0106 HSF_DNA-bind 2.9e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0106 K09419 - gmx:100815121 701.049