Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0099 ATGTCAGAGCGGGGTGCATTCTCCGTTGATTCTGCCATGGATGCTTCTAACAGTAAAGGAGGAGAAGAGAATAAGAAGAAGAAGGAGCATAAGATTCCTTTTATGAAGCTGTTCTCTTTTGCAGACACTTATGATTTTGTGTTAATGGCCATTGGATCTGTTGGGGCGTGTGTTCATGGTGCCTCTGTTCCTGTTTTCTTCATCTTCTTTGGCAAGTTGATCAATGTCATAGGCTTGGCTTATCTTTTTCCTAAGGAAGCTTCTCACAAAGTTGCTAAGTACTCGTTGGATTTTGTGTATCTAAGTATAGCAATACTATTTTCATCTTGGACAGAGGTGGCTTGTTGGATGCATACCGGAGAACGGCAAGCAGCAAAGATGAGATTGGCTTATTTAAAATCAATGTTGAATCAAGACATAAGTCTCTTTGATACTGAATCTTCCACAGGCGAGGTTATTTCTGCCATTACAAGTGACATTATCATAGTTCAAGATGCACTATCTGAAAAGGTAGGGAACTTCATGCACTACATAAGCAGATTCATAGCTGGGTTCACCATTGGGTTTGTGAGAGTGTGGCAGATTAGTCTTGTGACACTTTCAATAGTGCCGTTGATTGCACTTGCTGGAGGACTCTATGCATATGTCACAATTGGCCTTATTGCAAAGGTTCGTAAAGCGTATGTGAGAGCTGGTGAAATTGCAGAAGAGGTCATAGGGAATGTTAGAACGGTTCAAGCATTTGCAGGAGAAGAAAGGGCAGTGAAATCATACAAAACGGCTCTAATGAACACTTACAAAAACGGTAGAAAAGCAGGATTAGCAAAGGGACTTGGACTAGGGTCAATGCACTGTGTCCTTTTTCTTTCATGGGCTTTGCTTGTTTGGTTCACAAGCGTTGTTGTTCACAAGAGTATTGCCAATGGTGGAGAGTCTTTCACCACCATGCTCAATGTTGTCATCGCTGGCCTGTCACTTGGGCAGGCAGCACCTGATATCTCTGCATTTATCCGGGCAAAGGCGGCAGCATATCCAATTTTTGAGATGATTGAGAGGGACACAATCAGCAAAAGAAGCTCAGGTCGAAAGCTAAGCAAATTGGAGGGGCGTATCCAATTCAAGGATGTTTGTTTCAGCTATCCGTCTCGGCCGGATGTAACTGTCTTCAACCACCTCTGTCTTGACATTCCTGCAGGCAAGATTGTAGCCCTTGTGGGAGGAAGTGGTTCTGGAAAGAGCACTGTTATATCGTTGGTCGAACGCTTCTATGAACCACTTTCAGGTCAGATACTATTGGACAGGAATGATATCAGGGAACTTGATCTCAAATGGCTTAGGCAGCAAATTGGACTTGTTAATCAGGAACCTGCACTCTTTGCTACAAGCATCAAGGAGAACATTCTCTATGGAAAAGATGATGCCACTCTTGAAGAATTAAAACGCGCTGTCAAGCTTTCAGATGCTCAGTCTTTCATTAACAATCTTCCTGAAAGATTAGAAACTCAGGTTGGTGAGAGAGGGATACAGCTATCAGGTGGACAGAAGCAAAGAATTGCGATATCTCGAGCCATAGTGAAGAATCCATCAATTCTGTTGCTGGATGAAGCAACCAGTGCTCTGGATGCTGAGTCAGAGAAGAGTGTGCAGGAGGCTCTTGATCGCGTTATGGTCGGCCGGACAACTGTGATAGTAGCACACAGACTTTCTACAATTAGGAATGCAGATATGATAGCTGTTGTTCAAGGAGGGAAGATTGTGGAAACTGGAAACCATGAGGAGCTAATGTCCAATCCTACTAGTGTGTATGCATCTCTTGTTCAACTCCAAGAGGCAAGTTCTCTGCAGCGCCTCCCCTCCGTCGGGCCTAGCCTGGGCCGCCAATCAAGCATAAAGTACTCAAGGGAATTGTCCCGGACAACAACAAGCTTTGGAGGTAGTTTTCGATCCGATAAGGATTCTATTGGGCGGATCTGTGATGAAGAAAATGCAAGCAAGCCAAAGCATGTTTCAGCGAGAAGGCTATATTCTATGATTGGTCCTGACTGGGTTTATGGGGTTTTTGGGACATTGTGTGCATTTGTTGCTGGAGCACAGATGCCACTCTTTGCACTTGGAATCTCACATGCTCTTGTATCATACTATATGGATTGGGATACCACCAAACATGAAGTCAAGAAAATTGCTTTCCTCTTCTGTGGAGGAGCAGTCATAACTATCACTGTCCATGCCATTGAGCATCTTTGTTTTGGAATCATGGGAGAGCGCCTCACCCTTCGTGTCAGAGAAAGGATGTTTTCAGCTATTTTGAAGAATGAAATTGGCTGGTTTGATGATACAAGCAACACAAGTTCTATGCTTTCATCACGTTTAGAGACCGATGCAACTTTGTTGCGGACCATAGTTGTTGATCGTTCCACAATTCTGTTACAGAATGTTGCCCTGGTTGTTGCTTCATTCATTATTGCCTTCATGTTGAATTGGAGAATAACTCTTGTTGTCTTGGCCACATATCCTTTGATCATTTGTGGTCACATCAGTGAGAAACTTTTTATGAAAGGCTATGGTGGCAACTTGAGCAAAGCATACCTAAAAGCCAACATGTTGGCTGGGGAAGCTGTTAGCAATATTCGCACGGTCGCTGCATTTTGTTCTGAAGAAAAGGTCCTTGATCTCTATGCTAATGAGCTTGTTGATCCTTCGAAACGTTCGTTTCAAAGAGGCCAAATCGCTGGCATATTTTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTGTGGTATGGATCTGTTTTAATGGAGAAGGAGCTTGCAAGCTTTAAATCAGTGATGAAGTCATTTATGGTTTTAATAGTAACGGCGCTGGCTATGGGGGAGACTTTGGCGCTCGCCCCAGACCTTTTGAAAGGGAATCAAATGGTTGCGTCCGTTTTCGAAGTGATGGATAGGAAGACAGGCGTAATAGGTGATGTTGGAGAAGAGTTGAAGACAGTGGAAGGAACAATTGAGCTCAAGGGAATCCATTTCAGCTACCCTTCAAGGCCAGATGTGATTATTTTCAAGGATTTCAATCTTCTTGTTCCTTCAGGCAAGAGTATTGCCTTGGTTGGACAAAGTGGTTCTGGAAAAAGCTCTGTTATCTCCCTCATACTAAGATTTTATGATCCAACTTCTGGGAAAGTGCTGATTGATGGAAAAGATATAAGGAGACTGAATTTGAAATCTCTTAGGAAACACATTGGGCTTGTGCAGCAAGAACCGGCGCTTTTCGCGACATCAATTTACGAAAACATCCTTTATGGGAAAGAAGGAGCCTCTGATTCAGAAGTAATAGAGGCAGCGAAGCTTGCCAATGCTCATAACTTCATAAGTTGCCTTCCGGAGGGATACTCAACCAAGGTTGGGGAGCGAGGAGTTCAACTATCAGGTGGTCAGCGACAAAGAGTGGCCATTGCCAGAGCTGTCCTAAAGAACCCTGAAATCCTGCTCTTGGATGAAGCCACCAGCGCGCTCGATGTTGAATCCGAGCGCGTGGTTCAACAAGCTTTGGACCGGTTGATGCAGAACAGAACAACGGTTATTGTGGCACATAGGCTCTCCACAATAAGGAATGCTGATCAAATCTCAGTTTTGCAAGATGGCAAAATAATTGAGCATGGCACTCATTCCACTCTTATAGAAAATAAAAATGGATCTTACTTCAAATTAGTCAACCTTCAACAACAACAGCATCAACTATAG 3750 0.4352 MSERGAFSVDSAMDASNSKGGEENKKKKEHKIPFMKLFSFADTYDFVLMAIGSVGACVHGASVPVFFIFFGKLINVIGLAYLFPKEASHKVAKYSLDFVYLSIAILFSSWTEVACWMHTGERQAAKMRLAYLKSMLNQDISLFDTESSTGEVISAITSDIIIVQDALSEKVGNFMHYISRFIAGFTIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVRAGEIAEEVIGNVRTVQAFAGEERAVKSYKTALMNTYKNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSVVVHKSIANGGESFTTMLNVVIAGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTISKRSSGRKLSKLEGRIQFKDVCFSYPSRPDVTVFNHLCLDIPAGKIVALVGGSGSGKSTVISLVERFYEPLSGQILLDRNDIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQSFINNLPERLETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVIVAHRLSTIRNADMIAVVQGGKIVETGNHEELMSNPTSVYASLVQLQEASSLQRLPSVGPSLGRQSSIKYSRELSRTTTSFGGSFRSDKDSIGRICDEENASKPKHVSARRLYSMIGPDWVYGVFGTLCAFVAGAQMPLFALGISHALVSYYMDWDTTKHEVKKIAFLFCGGAVITITVHAIEHLCFGIMGERLTLRVRERMFSAILKNEIGWFDDTSNTSSMLSSRLETDATLLRTIVVDRSTILLQNVALVVASFIIAFMLNWRITLVVLATYPLIICGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVLDLYANELVDPSKRSFQRGQIAGIFYGISQFFIFSSYGLALWYGSVLMEKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKTGVIGDVGEELKTVEGTIELKGIHFSYPSRPDVIIFKDFNLLVPSGKSIALVGQSGSGKSSVISLILRFYDPTSGKVLIDGKDIRRLNLKSLRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISCLPEGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMQNRTTVIVAHRLSTIRNADQISVLQDGKIIEHGTHSTLIENKNGSYFKLVNLQQQQHQL* 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0099 1249 ProSitePatterns ABC transporters family signature. 1144 1158 IPR017871 GO:0005524
Amo05g0099 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 972 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo05g0099 1249 SUPERFAMILY ABC transporter transmembrane region 37 343 IPR036640 GO:0005524|GO:0016021
Amo05g0099 1249 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 988 - -
Amo05g0099 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 999 1243 IPR027417 -
Amo05g0099 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 609 IPR027417 -
Amo05g0099 1249 SMART AAA_5 398 590 IPR003593 -
Amo05g0099 1249 SMART AAA_5 1032 1235 IPR003593 -
Amo05g0099 1249 Pfam ABC transporter 1024 1172 IPR003439 GO:0005524
Amo05g0099 1249 Pfam ABC transporter 391 538 IPR003439 GO:0005524
Amo05g0099 1249 Pfam ABC transporter transmembrane region 687 958 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo05g0099 1249 Pfam ABC transporter transmembrane region 51 321 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo05g0099 1249 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 26 1245 - -
Amo05g0099 1249 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 26 1245 IPR039421 -
Amo05g0099 1249 CDD ABC_MTABC3_MDL1_MDL2 371 609 - -
Amo05g0099 1249 Gene3D - 361 610 IPR027417 -
Amo05g0099 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 338 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo05g0099 1249 MobiDBLite consensus disorder prediction 1 27 - -
Amo05g0099 1249 CDD ABC_MTABC3_MDL1_MDL2 1005 1243 - -
Amo05g0099 1249 CDD ABC_6TM_Pgp_ABCB1_D1_like 49 346 - -
Amo05g0099 1249 Gene3D ABC transporter type 1, transmembrane domain 652 990 IPR036640 GO:0005524|GO:0016021
Amo05g0099 1249 Gene3D ABC transporter type 1, transmembrane domain 36 613 IPR036640 GO:0005524|GO:0016021
Amo05g0099 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 371 607 IPR003439 GO:0005524
Amo05g0099 1249 ProSitePatterns ABC transporters family signature. 510 524 IPR017871 GO:0005524
Amo05g0099 1249 Gene3D - 995 1249 IPR027417 -
Amo05g0099 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1005 1241 IPR003439 GO:0005524
Amo05g0099 1249 SUPERFAMILY ABC transporter transmembrane region 667 986 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0099 Amo-Chr5 1099253 1106123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0099 51 631 Calmodulin-binding Proteins AT2G36910 38.071 1.96e-110 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0099 K05658 - gmx:100819045 2196.78