Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0098 ATGGGAAGGTCACCATGCTGTGATGAGAGTAGCGGTAATAATGTAAAGAAAGGGCCATGGACAGCAGAAGAAGATGAGAAGCTGATTGATTACATAAAGAAACACGGTCATGGAAGTTGGAGATCACTTTCAAAGCGTGCTGGTCTCAACAGATGCGGTAAGAGCTGCAGGCTCAGGTGGGCTAACTACCTTCGTCCCGATATCAAGAGAGGCAAATTCACCCCAGACGAGGAGAGGATCATCGTCAACCTTCATTCTCTTCTTGGAAACAAGTGGTCAAAGATTGCAAGCCATCTTCCGGGAAGAACTGATAATGAGATAAAGAATTTCTGGAACACTCACATAAGGAAGAAGCTTCTGCAGATGGGTATTGATCCAGACACACACAAGCCAAGGACTGATTTCAATCACCTCATCAATCTCACACACTTGCTTGCAGCAGCCATCTCCTCCAATTCAGGGAATCCTATGATGAATATGAACACTCCTACTTGGGGGAGAAACCCTAATATTGCTCTACAAGGAGATGTTACTTCTCAATTATCCCAACTACATCTGTTGCAAAATCTGTTGCAAATTATGAACAGCAACACATTTGTTAACATGGGGAGTAGTAACCCTAATTATAATCCTTCCTTCGATAATTCATATCTCAATGAATCAAACACACTCCAAGCTGTTGGATTGAAAAGTGAAGGACATGCAAACAACCCTGCCGCCCTATTCTCTCATCAACACGGTGGTGGTGCAGTTAATAACACGCAAGAGATTTCATCACAAGGAAATGAAGAAGAAAATCCATTGTTGCCAGCATTAGTAGCATCCTCTCCAGTAGTCAGTGATGGAACCTGCAGCAGCTTCAACCAGATGGAGAATAATAATAATAGTAGCTGTTGCAACACAGCTCCAACATCCACAACACAATCACCCAATAATTCCAGCACAATCTTTGATGATTTAGAGATGCTCCTTCAGGATGATCAAACATCTGATTCCTACTGGAAAGATATTCTAAACTTCACATCTACATATACATCTGCATCAACAAATTCATGGTAG 1059 0.4202 MGRSPCCDESSGNNVKKGPWTAEEDEKLIDYIKKHGHGSWRSLSKRAGLNRCGKSCRLRWANYLRPDIKRGKFTPDEERIIVNLHSLLGNKWSKIASHLPGRTDNEIKNFWNTHIRKKLLQMGIDPDTHKPRTDFNHLINLTHLLAAAISSNSGNPMMNMNTPTWGRNPNIALQGDVTSQLSQLHLLQNLLQIMNSNTFVNMGSSNPNYNPSFDNSYLNESNTLQAVGLKSEGHANNPAALFSHQHGGGAVNNTQEISSQGNEEENPLLPALVASSPVVSDGTCSSFNQMENNNNSSCCNTAPTSTTQSPNNSSTIFDDLEMLLQDDQTSDSYWKDILNFTSTYTSASTNSW* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0098 352 SMART sant 16 66 IPR001005 -
Amo05g0098 352 SMART sant 69 117 IPR001005 -
Amo05g0098 352 MobiDBLite consensus disorder prediction 247 264 - -
Amo05g0098 352 PANTHER MYB TRANSCRIPTION FACTOR 1 340 - -
Amo05g0098 352 MobiDBLite consensus disorder prediction 235 264 - -
Amo05g0098 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Amo05g0098 352 CDD SANT 72 115 IPR001005 -
Amo05g0098 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Amo05g0098 352 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Amo05g0098 352 CDD SANT 19 64 IPR001005 -
Amo05g0098 352 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 340 - -
Amo05g0098 352 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Amo05g0098 352 Gene3D - 72 119 - -
Amo05g0098 352 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Amo05g0098 352 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Amo05g0098 352 Gene3D - 16 69 - -
Amo05g0098 352 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0098 Amo-Chr5 1085958 1088275 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0098 1 338 MYB Transcription Factor Family AT5G16770 46.369 4.17e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo05g0098 Myb_DNA-binding 1.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0098 K09422 - gmx:100810159 362.844