Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0090 ATGGATTACAGCCGAGACGGCGACGTCGTTCAAATCATCGCCGGCGCCGCTAATGACCCTTCCGTCTGGGCAACCGAAGAGGACTACAAATTCTGGAACAACGAAGGTGACAGCACGCCTTCCAATTCCGGCGGAGGAAGCGGATACGACCAGAGGAAGAAGGCAAGAAGCTCTCAGGACAACAACGCAACGACGTCGTCGAGCAACAACAATAGCAACAGGGCGAAGGCCATAGGGAAGATGTTCTTCAAGACTAAACTATGCTGCAAGTTCCGTGCCGGAACCTGCCCTTACGTCACCAACTGCAACTTCGCCCACTCCGTCGAAGAGCTCCGCCGCCCTCCACCCAACTGGCAGGAGATCGTCGCGGCTCACGAGGAGGAGAGGGCCAACACCGGCTCCGACACTGTTGTTCCCGCCAGGGAGGAGTTCCAGATTCCCATTTTGGGGTCTTCCAATTACTCCGGCGAGTCGCAGCGGTCTTACAAGGGTAGGCATTGCAAGAAGTTCTATACAGAAGAAGGGTGTCCCTATGGGGATAGTTGCACTTTTCTTCATGATGAGCAATCCAAGTATAGAGAGAGTGTGGCTATAAGCTTGGGCCCTGGTGGCTATGGTGGTGGAGGGGGTGGTGCCGGTGGAGGAGGGGGTGGTGGAGGTACTGGAAGTGGCAGTGGTGCCGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGGAGGTGGGAATGGGAATGGGCCTAATTCGAAGCCTTCGAATTGGAAGACGAGGATTTGTAACAAGTGGGAGATGACAGGGTATTGTCCCTTCGGAAACAAGTGCCATTTTGCTCATGGTGCAGCAGCAAGCCACCTACATGGAAAAAAGTTTGACTCTGGTGTTATGACCGCAGAATTGCATCGGTATGGAGGTGGGCTTGTAGAGGGAGAAAGTAGAGACCCTGCTTCTGCTGCTGCTCCGGACGCGAAGCAGGGAGGCGTACCTTCAAAATCTCCTGCTGATAATGTGGTTGCATCAGTTACCCCGGTTGCTCATTCGGATTCGATGTATCACATGGGAGTTCCTTCGTCGCAAAGGGCTACGATTGTGCTTCAGAGGCCTGGACAGAGAGCGCACCAGAAGTGGAAAGGTCCTGATAAAATCAGTAGAATATATGGTGATTGGATTGACGACATTGAATAG 1179 0.5377 MDYSRDGDVVQIIAGAANDPSVWATEEDYKFWNNEGDSTPSNSGGGSGYDQRKKARSSQDNNATTSSSNNNSNRAKAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHSVEELRRPPPNWQEIVAAHEEERANTGSDTVVPAREEFQIPILGSSNYSGESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKYRESVAISLGPGGYGGGGGGAGGGGGGGGTGSGSGAGAGAGAGAGAGGGGNGNGPNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGAAASHLHGKKFDSGVMTAELHRYGGGLVEGESRDPASAAAPDAKQGGVPSKSPADNVVASVTPVAHSDSMYHMGVPSSQRATIVLQRPGQRAHQKWKGPDKISRIYGDWIDDIE* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0090 392 MobiDBLite consensus disorder prediction 58 73 - -
Amo05g0090 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 83 107 IPR000571 GO:0046872
Amo05g0090 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 253 278 IPR000571 GO:0046872
Amo05g0090 392 Pfam CCCH-type zinc finger 165 187 IPR041367 -
Amo05g0090 392 ProSiteProfiles Zinc finger C3H1-type profile. 82 109 IPR000571 GO:0046872
Amo05g0090 392 Coils Coil 388 392 - -
Amo05g0090 392 MobiDBLite consensus disorder prediction 32 73 - -
Amo05g0090 392 Gene3D - 246 281 - -
Amo05g0090 392 Gene3D - 79 113 - -
Amo05g0090 392 Gene3D - 150 200 - -
Amo05g0090 392 ProSiteProfiles Zinc finger C3H1-type profile. 161 189 IPR000571 GO:0046872
Amo05g0090 392 PANTHER CCCH ZINC FINGER/TIS11-RELATED 240 389 IPR045877 GO:0003729
Amo05g0090 392 PANTHER CCCH ZINC FINGER/TIS11-RELATED 18 206 IPR045877 GO:0003729
Amo05g0090 392 ProSiteProfiles Zinc finger C3H1-type profile. 252 280 IPR000571 GO:0046872
Amo05g0090 392 SUPERFAMILY CCCH zinc finger 80 113 IPR036855 GO:0046872
Amo05g0090 392 SMART c3hfinal6 252 279 IPR000571 GO:0046872
Amo05g0090 392 SMART c3hfinal6 161 188 IPR000571 GO:0046872
Amo05g0090 392 SMART c3hfinal6 82 108 IPR000571 GO:0046872
Amo05g0090 392 MobiDBLite consensus disorder prediction 304 333 - -
Amo05g0090 392 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 18 206 - -
Amo05g0090 392 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 240 389 - -
Amo05g0090 392 SUPERFAMILY CCCH zinc finger 250 279 IPR036855 GO:0046872
Amo05g0090 392 MobiDBLite consensus disorder prediction 213 252 - -
Amo05g0090 392 MobiDBLite consensus disorder prediction 34 48 - -
Amo05g0090 392 SUPERFAMILY CCCH zinc finger 160 189 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0090 Amo-Chr5 998126 1001408 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0090 254 278 C3H Transcription Factor Family AT1G68200 64.000 4.38e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo05g0090 zf-CCCH 1.3e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0090 - - adu:107487192 694.886