Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0089 ATGTCGTCGTCTTCTTCGTCTTCACCATCATCAGAATCAGATCACAGAGGAGGATCAGCAGCATCAACAGCATACAACACACCACCAATACTCGTAGCTCTCGTCCTCATCGTCCTCGTCATCTGCTTCGTCTGCTTCACCCTCGTCTACTTCTGCCGCTGCTACTTCGTCAGCATCATCCATACCCTCGCCTTCCACCGCTCCCCCTCCGCCAACGCAGCCACCACCACCACCGCCTCCGCCACCGCCAACACCATCAACAACGCTCCTAATTCCCCCTTCATGGGCCTCGACGCTTCCCTCCTCCACGAATTCCCCACCTTCCCTTATTCCTCCGTCAAGGATCTCCGCAAGGAGAAGAAGTACGCCCTTGAATGCGCCATCTGTCTCTTGGAGTTCGAGGACGACACCGTTCTCCGCTTGCTCCCCGTTTGCCGCCACGTGTTCCACCAAGAGTGCGTTGATCTCTGGCTTCAACGACACAAGACCTGCCCCGTTTGCCGCACTGATCTTGAAACCAGAAAGTCTTCTGCTTCTTCGATTACTCACGATCATGACAGGCAGAGTGCTGCTGTTGGAGGAGACGACGGTAATGGTGATGATGACGTCTGCATTGACGTCAAAGAAGGCGGCGACGACGACGGTAATAACAGATTCTTGCGGTCGCATTCGACGGGGCATTCAATAGTTATGGTTAGAGAAGAAGGAAGAAACGACGAAGATGATGATAGGTATAGGTTGAGGTTGCAGGAGGATGCAGAGTTGAGAATTGTTAACAATGATATGAAGAAGAAGAAGAATCACCAATACTCGAGAAGCTGCGAGAGTTACAAGGAGATGATGATGATGATGGCGGCGGCAAAGCCCCTTGTTCCGCCTTGTACTAACTGTGGTTATGTTGATCATCACACTCTCTCCGCTCCTTCTTCTTCTTCGCGTGTTGGTGCTAACTGA 954 0.5199 MSSSSSSSPSSESDHRGGSAASTAYNTPPILVALVLIVLVICFVCFTLVYFCRCYFVSIIHTLAFHRSPSANAATTTTASATANTINNAPNSPFMGLDASLLHEFPTFPYSSVKDLRKEKKYALECAICLLEFEDDTVLRLLPVCRHVFHQECVDLWLQRHKTCPVCRTDLETRKSSASSITHDHDRQSAAVGGDDGNGDDDVCIDVKEGGDDDGNNRFLRSHSTGHSIVMVREEGRNDEDDDRYRLRLQEDAELRIVNNDMKKKKNHQYSRSCESYKEMMMMMAAAKPLVPPCTNCGYVDHHTLSAPSSSSRVGAN* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0089 317 Coils Coil 315 317 - -
Amo05g0089 317 SMART ring_2 126 167 IPR001841 -
Amo05g0089 317 MobiDBLite consensus disorder prediction 1 20 - -
Amo05g0089 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 174 IPR013083 -
Amo05g0089 317 PANTHER RING-H2 FINGER PROTEIN ATL29 20 268 - -
Amo05g0089 317 MobiDBLite consensus disorder prediction 175 198 - -
Amo05g0089 317 SUPERFAMILY RING/U-box 110 174 - -
Amo05g0089 317 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Amo05g0089 317 Pfam Ring finger domain 125 168 IPR001841 -
Amo05g0089 317 PANTHER RING FINGER DOMAIN-CONTAINING 20 268 - -
Amo05g0089 317 CDD RING-H2_PA-TM-RING 125 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0089 Amo-Chr5 995813 996766 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0089 27 267 Rapid Response to Elicitors AT3G05200 34.351 7.00e-36 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0089 - - ahf:112747412 578.17