Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0088 ATGGCCTTATTAGAAGATCATCATCATCTTTCATCATCAAATGAGTTTTCCAACTTCATTGTGTATGATACTATTTCTGCAACCCCTTTTAGCAGCCATGGAAGTTCATCTACTTCTTTCATGGCAGAAGAAAACAAGGTTGAAGAGTATGGAGAGAGGACAACAACACGAAAACGGCAATCGGGTGAAGCAGGGCAAGGGAAGAAGAAGAGAAGGAGAAAGCCAAGGGTATGCAAGAACAAAGAAGAAGCTGAGAATCAAAGAATGATCCACATTACTGTTGAAAGGAACAGAAGGAAGCTCATGAATGAGCATCTTGCTGTTCTTCGCTCACTCATGCCTGAATCCTATGTCCAAAGGGGTGATCAAGCATCAATAGTAGGTGGAGCTATAGAGTTTGTGAAGGAGCTAGAGCAGCTGTTGCAGTGTCTTGAGGCTCAAAAGTTGAAGCTTGTACATCAAGGAATGGCAGCACAACAATCCAACAAGAATAACAATGAAGATGAGTTGATGATGATGATGATGATGGTGATGGGATCAGCCCCTTTTTCTCATTTCTTTGTGCATCCACAGTTCACTTGGTCTCAGGCTCCAAACAAATATGCTTCCCACCACAACAAGACTAACAATAATAATAATAATAATCAAGCAGCCATGGCTGACATTGAGGTTACTTTGATTGAAACCCATGCAAACCTCAGAATCCTCTCAAGGAAAAGCCCCAAGCAACTTTCAAAGTTGCTTTCTGGTTTTCAGAATCTCTCTCTCACCATTTTGCATCTCAATGTCACCTCCATGGACCCCTTAGTACTCTATTCCATTAGCGCCAAGGTTGAAGAAGAATGCCAACTTGGTTCTGTAGATGACATTGCAAGTGCAGTTCACAACTTGCTTAAAATGATTGAAGAAGAAGATTCCCTTTGCAGTTTATACGGTGAAGTTACCAAATCAACCCCCTCTCCCCTTCAAGACTCACTAGAGAATTCAAACACAGAATATTCTCTTAGCTAG 1011 0.4144 MALLEDHHHLSSSNEFSNFIVYDTISATPFSSHGSSSTSFMAEENKVEEYGERTTTRKRQSGEAGQGKKKRRRKPRVCKNKEEAENQRMIHITVERNRRKLMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEQLLQCLEAQKLKLVHQGMAAQQSNKNNNEDELMMMMMMVMGSAPFSHFFVHPQFTWSQAPNKYASHHNKTNNNNNNNQAAMADIEVTLIETHANLRILSRKSPKQLSKLLSGFQNLSLTILHLNVTSMDPLVLYSISAKVEEECQLGSVDDIASAVHNLLKMIEEEDSLCSLYGEVTKSTPSPLQDSLENSNTEYSLS* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0088 336 MobiDBLite consensus disorder prediction 316 336 - -
Amo05g0088 336 MobiDBLite consensus disorder prediction 45 63 - -
Amo05g0088 336 PANTHER TRANSCRIPTION FACTOR BHLH71 15 308 - -
Amo05g0088 336 MobiDBLite consensus disorder prediction 30 84 - -
Amo05g0088 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 85 156 IPR036638 GO:0046983
Amo05g0088 336 Coils Coil 134 154 - -
Amo05g0088 336 Gene3D - 78 154 IPR036638 GO:0046983
Amo05g0088 336 SMART finulus 92 143 IPR011598 GO:0046983
Amo05g0088 336 PANTHER MAX DIMERIZATION, MAD 15 308 - -
Amo05g0088 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 86 137 IPR011598 GO:0046983
Amo05g0088 336 Pfam Helix-loop-helix DNA-binding domain 87 138 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0088 Amo-Chr5 989284 990800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0088 78 278 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 51.244 4.91e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo05g0088 HLH 4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0088 - - aip:107642328 571.237