Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0087 ATGGCATCTCTTGGCAACCCAAGAACTTGGGTTCCATATGTGAACAGCAAAGACTGTTCTCAAGGATTTTGCAGCTTGTACTGTCCACAGTGGTGTTATACAGTGTACCCTCCACCTCCTCCTCCTCCATTTGAATTCCCTGATGAAGATTCAGGTCCGAATTTCTCACCTCTTGTTATTGCAATCATTGGAGTGTTGGCAAGTGCTTTTCTCCTTGTGAGTTACTACACCATAATTTCCAAGTACTGTGGCAGAAGAGAATCATCCTCAGCAGAACATGAAGAAGAAGTAACAAATGTTGAGATTTTGGAAGACAACCACAACCCTTCACTCCATGAGCCATGGCATGCCTCAACAACTGGTCTAGATGAGGCACTCATCAAGACCATAACTGTTTGCAAGTACAAGAAAGGCGAAGGACTCGTTGAGGTAACGGATTGTTCCGTTTGCCTCAGCGAGTTCCAAGATGGCGAGAGCATTCGGCTCTTGCCAAAGTGTAGCCATGCTTTTCACATTCTTTGCATTGATACATGGCTCAAGTCTCACTCCAATTGCCCTCTTTGCCGCGCCACGCTTTTCACCTTCAATGCTGCAGTGCCATTTCATGCGCTGCCGCCGGCACCCCAGGTGTTGGAACTACCTTCTTCAGCAAGAAATGAAGGTTCTTCTGAGAATGTGGTTCATGTAGATGAAAATGTGGATAATGGAACAAGGGAGAGTGATGAGTTATTGGATGTGGTGTTGGACGAAGGTGCACTGAATGGTAACAGAGAAGTTCCAAAGACTAATAATGCATTCAGAGCTTTCAGTGACTTGGGGAATTTGAGGGGAAGGCATGCTGAGCTTAGAGATGAGGATTACTATGAATCAATAAGAAGATCAGTGTCTATGGACCATTCCTTTCAAAATGGTGTTACACTTTCAGTAGCTGATGTTCTTCACATGAATCATGATCAAGATTCAAATGAAGAAGTTGGCACTTCAAAGAGATCATCATCATCAATGGGTGAAAGTAGCAAATCAAGCTATAGAAGAAGGGTGTTGCATTGTGTTCTGAGTCCAATTTCAATGAAGAGATCATTCTCAGGTGGAAGATTCTCTCTTAGTGGAAGAAATGGCAGGGGAAGGCAGGGGATTTTACCTTTATGA 1149 0.4386 MASLGNPRTWVPYVNSKDCSQGFCSLYCPQWCYTVYPPPPPPPFEFPDEDSGPNFSPLVIAIIGVLASAFLLVSYYTIISKYCGRRESSSAEHEEEVTNVEILEDNHNPSLHEPWHASTTGLDEALIKTITVCKYKKGEGLVEVTDCSVCLSEFQDGESIRLLPKCSHAFHILCIDTWLKSHSNCPLCRATLFTFNAAVPFHALPPAPQVLELPSSARNEGSSENVVHVDENVDNGTRESDELLDVVLDEGALNGNREVPKTNNAFRAFSDLGNLRGRHAELRDEDYYESIRRSVSMDHSFQNGVTLSVADVLHMNHDQDSNEEVGTSKRSSSSMGESSKSSYRRRVLHCVLSPISMKRSFSGGRFSLSGRNGRGRQGILPL* 383
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0087 382 SMART ring_2 147 188 IPR001841 -
Amo05g0087 382 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 372 IPR044675 -
Amo05g0087 382 CDD RING-H2_PA-TM-RING 146 189 - -
Amo05g0087 382 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Amo05g0087 382 Pfam Ring finger domain 146 189 IPR001841 -
Amo05g0087 382 MobiDBLite consensus disorder prediction 363 382 - -
Amo05g0087 382 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 372 - -
Amo05g0087 382 SUPERFAMILY RING/U-box 146 195 - -
Amo05g0087 382 MobiDBLite consensus disorder prediction 317 341 - -
Amo05g0087 382 MobiDBLite consensus disorder prediction 326 341 - -
Amo05g0087 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 195 IPR013083 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Amo05g0087 Amo-Chr5 983061 984408 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0087 1 339 C3H Transcription Factor Family AT3G03550 41.311 5.36e-70 222
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0087 - - adu:107487194 723.391