Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0086 ATGCGGAACTGTAACAGACGTCGAGTAGATCATAAAGAACAAACAAGGCAAGAGCAGGGGTTTTGCCTTCGTTACTATGGCTTCAGGGGAAGAGGCTCTTGCTGTCGTTCACAAGTTCAATTCTCATCAAATATCAGGAAGGGAAATAAGGATAGAGCTTGCCAAGAGATTCAAGAAGCCGCCGCCTCCTCCTCCACCGTCTCCGAGTCCCCCTGCCGGCGAGACACGTCACGTGTTTCGTCCAGGGTTGTCTTTGAGAGCCCTGCCGGAAGATCTGCAGGGTATGGATTTGTTTCTTTCCTCACAAAAGAGGATGCAGAGGCTGCAATTTCTGCTTTGGATGGGAAGGAATTAATGGAGCGACCACTTCGTCTTAAGTTGAGTGAAAAGAAAGTCAAAGCAGCTCCAACTGAAAGGGATGAAGACCAAGCTCCTGAATTGGTGGATCAAGAGAAGCTCAAAGAAGCTGAAACTGAAAAGGAGGAAATCCATGATTCTGATGCTCAGCTGGAACAATCATAA 522 0.4751 MRNCNRRRVDHKEQTRQEQGFCLRYYGFRGRGSCCRSQVQFSSNIRKGNKDRACQEIQEAAASSSTVSESPCRRDTSRVSSRVVFESPAGRSAGYGFVSFLTKEDAEAAISALDGKELMERPLRLKLSEKKVKAAPTERDEDQAPELVDQEKLKEAETEKEEIHDSDAQLEQS* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0086 173 Gene3D - 75 167 IPR012677 -
Amo05g0086 173 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 130 IPR000504 GO:0003723
Amo05g0086 173 PANTHER OS02G0815200 PROTEIN 75 151 - -
Amo05g0086 173 MobiDBLite consensus disorder prediction 130 173 - -
Amo05g0086 173 SUPERFAMILY RNA-binding domain, RBD 80 133 IPR035979 GO:0003676
Amo05g0086 173 PANTHER CHLOROPLAST, PUTATIVE-RELATED 75 151 - -
Amo05g0086 173 Coils Coil 153 173 - -
Amo05g0086 173 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 124 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0086 Amo-Chr5 974990 977481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0086 42 131 Eukaryotic Initiation Factors Gene Family AT4G34110 32.609 5.67e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0086 - - gmx:100793319 105.531