Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0076 ATGGCTTCCGAAGGCTTCACCGACAAGAATGCAGTGTTCCGTAAACTCAAGTCCAAGCCCGAAAACAAGATGTGTTTTGATTGCAATGCTAAGAACCCAACTTGGGCCTCCGTTACCTACGGGATCTTCCTCTGCATCGATTGCTCCGCTACTCACCGGAGTCTTGGTGTGCACATCAGCTTCGTCAGATCTACAAATTTAGACTCATGGAGTCCTGAACAGCTAAAAATGATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTCTTTAAGCAGCATGGATGGACTGATGGTGGTAAAATAGAGGCCAAGTATACGTCAAGAGCTGCAGAGTTATATAAACAACTTCTTTCTAAGGAAGTTGCTAAGAGTATGGCTGAGGAAGCAGGTTCATCGTCATCACCTGTTGATTCTCACTCTTCCCAAGCACCTAATGGACTTCCTGAAATAAAGACTAATGGATTACCAAAGGAAAAGAATCTAGGAAAGCCTGAAATTCCTGAGAAAACCACTTCACCAAGAGCTTCACATACAGTGGTCTCCAGCACTGTCAAGAAGCCTATTGGTACCAAAAAACCTGGCAAGACTAGTGGACTTGGTGCCCGGAAGCTCACAACAAAGCCAAGTGAGTCTCTTTATGACCAGAAGCCTGAAGAACCACCTGCTCCAGTACCCACCTCAACAAAAAGCAATTTTCCTGCCGGGCCATCAACATCTCGGTTTGAGTATGTAGAACATGTCCAATCACCTGAGATGAATTCTGGAGGTGTGGCTACAAATATGCATGGACATGTTGCTCCACCAAAGTCATCAAGCTTCTTTGCAGACTTCGGGATGGACAATGGTTTTCCTAGGAAATCTGGGCCAAGTCCAACTAAAGTGCAAATTCAAGAATCTGACGAAGCAAGAAAGAAGTTCTCAAATGCTAAATCTATTTCTTCCTCCCAATTTTTTGGAGATCAGAACAAAGCTGCAGACGTGGCTACTCAAGCTACTTTGTCAAAGTTTTCAGGTTCATCTGCCATCTCCAGTGCTGATCTTTTTGGCGACTCATCAGACAGCTCCATTGATCTTGCTGCCAGTGACCTCATCAACCGACTATCTTTCCAGGCACAACAGGATATCTCTTCCCTTAAAAACATTGCTGGTGAGACTGGGAAGAAGCTAAGCTCCTTGGCCAATACATTGATGACAGATCTTCAGGACCGGATACTCTAA 1218 0.4475 MASEGFTDKNAVFRKLKSKPENKMCFDCNAKNPTWASVTYGIFLCIDCSATHRSLGVHISFVRSTNLDSWSPEQLKMMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQLLSKEVAKSMAEEAGSSSSPVDSHSSQAPNGLPEIKTNGLPKEKNLGKPEIPEKTTSPRASHTVVSSTVKKPIGTKKPGKTSGLGARKLTTKPSESLYDQKPEEPPAPVPTSTKSNFPAGPSTSRFEYVEHVQSPEMNSGGVATNMHGHVAPPKSSSFFADFGMDNGFPRKSGPSPTKVQIQESDEARKKFSNAKSISSSQFFGDQNKAADVATQATLSKFSGSSAISSADLFGDSSDSSIDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLANTLMTDLQDRIL* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0076 405 SUPERFAMILY ArfGap/RecO-like zinc finger 11 124 IPR037278 -
Amo05g0076 405 Gene3D Arf GTPase activating protein 2 141 IPR038508 -
Amo05g0076 405 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Amo05g0076 405 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Amo05g0076 405 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Amo05g0076 405 MobiDBLite consensus disorder prediction 171 185 - -
Amo05g0076 405 CDD ArfGap_ArfGap2_3_like 8 123 - -
Amo05g0076 405 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Amo05g0076 405 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Amo05g0076 405 MobiDBLite consensus disorder prediction 124 238 - -
Amo05g0076 405 Pfam Putative GTPase activating protein for Arf 12 113 IPR001164 GO:0005096
Amo05g0076 405 MobiDBLite consensus disorder prediction 127 148 - -
Amo05g0076 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 405 - -
Amo05g0076 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0076 Amo-Chr5 849107 854195 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0076 13 91 C2H2 Transcription Factor Family AT4G05330 45.000 5.25e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0076 K12493 K11855 gmx:100785169 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0076 05 849107 854195 Amo01g0814 01 11268146 11272721 PCT
Amo01g0814 01 11268146 11272721 Amo05g0076 05 849107 854195 PCT