Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0061 ATGTCTCCGCGGGCGCTGGCTCTGGTTTCAGAGGACGAAGGGCAGAGCAAAGTCTCGACGGTAGCTTCTGCATCTTCACAATCCCTGGACTGTTTCTCCCAAAGTGGGGGTGGAGGATTGAAAGAGCGAAATTACCTTGGGTTGTCTGATTGCTCATCAGTGGACAGCTCCAATTCTGCTGTCCCAAGCTTGTCTGATGAGAAGAAGGGCAACCTGAATTTGAAGGCTACTGAATTGAGGCTGGGACTCCCTGGATCCCAGTCACCTGAACGGCATCCGGATGTAGATGTGTTCTCTTTGAGCTCATCGAAGCCCGATGAGAAGCCGTTGTTCCCTTTGCTTCCAATGAAAGATGGTATCTGCTCGTTGTCCCAGAAGAATGTTGCTGTGTTGGGAAACAAAAGGGGTTTTGCTGATACCATAGATGGATTTTCTCAGGGGAAGTTTGCTGGTAATACAGCAATAAGTGCAATGTTATCACCTAGATCTTCTGGTCTACAGCCTACTGCGACGAAGGAAATGCCAATGGTGTTACAAGAACAGCCATGTGCAGCTAATGGAACTGGTCTAAATAGCCATACGGGTCCTTCTGCCAGTGCCAGTGCCAGTGCCCCAGCTTCTAAGGCGCAGGTCGTTGGTTGGCCTCCTATAAGATCATTTAGGAGAAATTCAATGGCAACCGCATCAAAGAACAATGATGAAGTGGATGGAAAACCTGGTTTGGCCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTCAGGAAGGTGGATCTCAGAAGTTATGCATCCTATCAGGAACTATCTTCTGCCCTTGAGAAGATGTTCACTTGTTTTACCCTAGGTCAGTGTGGCTCCCATGGATCTCCAGGAAGAGAAATGTTGAGTGAAAGCAAGCTGAGGGACCTTCTGCATGGTTCAGAGTATGTCCTCACTTACGAGGATAAAGATGGGGATTGGATGCTTGTAGGGGACGTACCTTGGGAGATGTTCATAGACACTTGTAAAAGGCTGAAAATCATGAAGGGTTCTGATGCAATTGGTTTAGCTCCCAGGGCCATGGAGAAGTCCAAGAGCAGGTGTTAG 1092 0.4844 MSPRALALVSEDEGQSKVSTVASASSQSLDCFSQSGGGGLKERNYLGLSDCSSVDSSNSAVPSLSDEKKGNLNLKATELRLGLPGSQSPERHPDVDVFSLSSSKPDEKPLFPLLPMKDGICSLSQKNVAVLGNKRGFADTIDGFSQGKFAGNTAISAMLSPRSSGLQPTATKEMPMVLQEQPCAANGTGLNSHTGPSASASASAPASKAQVVGWPPIRSFRRNSMATASKNNDEVDGKPGLAALFVKVSMDGAPYLRKVDLRSYASYQELSSALEKMFTCFTLGQCGSHGSPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRC* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0061 363 PANTHER AUXIN-INDUCED PROTEIN 24 356 - -
Amo05g0061 363 MobiDBLite consensus disorder prediction 1 36 - -
Amo05g0061 363 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 356 IPR003311 GO:0005634|GO:0006355
Amo05g0061 363 SUPERFAMILY CAD & PB1 domains 243 344 - -
Amo05g0061 363 Pfam AUX/IAA family 77 354 IPR033389 -
Amo05g0061 363 Gene3D - 240 356 - -
Amo05g0061 363 MobiDBLite consensus disorder prediction 13 34 - -
Amo05g0061 363 MobiDBLite consensus disorder prediction 184 205 - -
Amo05g0061 363 ProSiteProfiles PB1 domain profile. 243 347 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0061 Amo-Chr5 659264 662721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0061 163 353 B3 DNA Binding Superfamily AT4G23980 25.131 1.68e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo05g0061 AUX_IAA 4.9e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0061 K14484 - gmx:547502 539.265