Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0052 ATGGCGAATGGTATCACGCACAAGCCTTCTCATTCCATGCTCGTGGGTCGGTTTTACGCCTTACTTCCACAGCGCCAAGGCTACCTCAAGGCTTTCACTGCCGAAGAAATTGTTCGAGCTTATGGGCTATTGTTGTCAGAACTCACCTCCAATGTGAACCCCATCATTACCGATCTCACTATCATTGCCGGCGAGCAGAGGAAACACGCCAAGGGCATCGCCGATGTCATTTGCAACCGGATTCTTGAGGTGCCTGCCGATAAAAAACTTCCTTCTCTCTATCTTCTGGACAGTATTGTGAAGAATTTTGGCCAGGAATATGTTAAACACTTCTCTTTACGTCTACCTCAAGTTTACTGTGAGGCATACAGGCAGGTTCAGCCCAATCTGCATTCTGTTCTGCAAGGTCTCTTTGGTACCTGGTCAAAGATATTCCCTCCCTCTGTCCTAAGCAATATTGAAGCTCAATTGCAATCTTCACCAGCAGTTAATAATCAACAATCCTTTGCTAATCACCTTGGGGCATATGATTTTCGTGGACCGATTCTTGGGGCACATGTCACTAAACCACAATCCTTGCAGCAGATGGAACACTCTAGTTCAATCATGGATAATCTTGGTGGTGATCGGTTGGATTCAACGGGAACTGTAGGTAATACAAGAGGAGGAGGATTGAATGAATGGCAACAAAAGAGATTTTCTAGTGATAATTGGAACATATTTCAAACTTCCAAGACTTATAATCTCAATGATGAACAACGTCAAAGTCCAAGAGCTCTTATTGAGGCATATGGTTGTCACAAAAGCCGTGAAATTCCTAGTACTAAGCTTTTATTGGTGGAGCAGCCTGGCAGAAATGGTTTTGGGAGCAAGTTTCCATTGGCATCATGGCAGGACACTGAAGAAGAGGAGTTTGATTGGAAAGATGTGAATCCAGGATTAGTAGACTGTAGTAGAAACAGCAGTTCTATGCAATCAAGTGTTAGATTCTCCAAGAAAAGGAAGTTATCTAATGATCTATCTAATCCTTCACAGTACCCCTTTACTATGGGGGCTGCTCCCCCTGCTGTCAATGCTCATGGCACTCGTCCTTCCGGCTTGAATACAGCATTTCCATTGCAAAAACGTCCTAATGTAGGTCATGGCCCAAATAAAACTCAGTTTATACATGACCAATTGCCTAATCAACCTGGACCAGTTTCCTCTAACCTGCAAAATCATGGACAAACACCTCAACTACAGTTTCTTCCACCTCAAATTCCATCTTCAACACAAATTAGTCATGGGAGCTCTTTGCAAGGACATGGTGCCTCAATAAGTACGCCCATCTCAAATCCATTACCTGATATGCTGGGCCAAAGTTTATATTTACATGGGGGAATCTTGCCACCTTTATGTTCAAGCCTCCCAACTGCTCCATCACAAACGATGTCTCATCCCCATGCTGATGCTTCAGTGACAAGTCAACCACCACCTGCATATCTTGATTTGCTTAGTTCACTAGTGAACCACGGTGTGATCTCGGTAACTAATCCACCCACCAATCCACCCGCCGGACTGGATTTCATTGGGACGGAGTTCGATCCAGATATCTTGAAGGTTCGTCATGAAGGTGTAATCAGTGCCTTATACGGTGATCTTCCTAGACAATGCAGGAGCTGCGGTCTCCGATTCAAAAGGCAAGATGAGCACAGTAGACATATGGATTGGCACGTGACTAGGAACCGAATGTCAAAAAGCCGGAAGCAGAAGGGGTCTCAAAAGTGGTTTGCAAGTGGGAGCATGTGGCTGAGTGGTGCAGAGGCTTCGGGAAAGGAATCGATTCCAAGCCACGAAATGGAGGAGTGGATGTATAGAGGAGCCACATACCTTAAGGCACCCATGGGAACAACATTGGCCACCTTGGACAGACATCAACTAGGACCCATTGTTCATTCCAAATGCAGATCTGACTCTGACTCTACTATGCCCTCAACCAACAGGGAACCTACCAAGAGAGTAGTAAGAGAAAAAGAATGCGGGTCGACCAAACATCAGTTTTGTGCACCCTTGATTAGGACTTACTAA 2067 0.4504 MANGITHKPSHSMLVGRFYALLPQRQGYLKAFTAEEIVRAYGLLLSELTSNVNPIITDLTIIAGEQRKHAKGIADVICNRILEVPADKKLPSLYLLDSIVKNFGQEYVKHFSLRLPQVYCEAYRQVQPNLHSVLQGLFGTWSKIFPPSVLSNIEAQLQSSPAVNNQQSFANHLGAYDFRGPILGAHVTKPQSLQQMEHSSSIMDNLGGDRLDSTGTVGNTRGGGLNEWQQKRFSSDNWNIFQTSKTYNLNDEQRQSPRALIEAYGCHKSREIPSTKLLLVEQPGRNGFGSKFPLASWQDTEEEEFDWKDVNPGLVDCSRNSSSMQSSVRFSKKRKLSNDLSNPSQYPFTMGAAPPAVNAHGTRPSGLNTAFPLQKRPNVGHGPNKTQFIHDQLPNQPGPVSSNLQNHGQTPQLQFLPPQIPSSTQISHGSSLQGHGASISTPISNPLPDMLGQSLYLHGGILPPLCSSLPTAPSQTMSHPHADASVTSQPPPAYLDLLSSLVNHGVISVTNPPTNPPAGLDFIGTEFDPDILKVRHEGVISALYGDLPRQCRSCGLRFKRQDEHSRHMDWHVTRNRMSKSRKQKGSQKWFASGSMWLSGAEASGKESIPSHEMEEWMYRGATYLKAPMGTTLATLDRHQLGPIVHSKCRSDSDSTMPSTNREPTKRVVREKECGSTKHQFCAPLIRTY* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0052 688 MobiDBLite consensus disorder prediction 648 662 - -
Amo05g0052 688 ProSiteProfiles CID domain profile. 33 161 IPR006569 -
Amo05g0052 688 CDD CID_Pcf11 38 159 - -
Amo05g0052 688 MobiDBLite consensus disorder prediction 318 344 - -
Amo05g0052 688 Gene3D - 30 160 IPR008942 -
Amo05g0052 688 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 610 653 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Amo05g0052 688 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 10 610 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Amo05g0052 688 Pfam CID domain 53 151 IPR006569 -
Amo05g0052 688 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 10 610 - -
Amo05g0052 688 MobiDBLite consensus disorder prediction 394 416 - -
Amo05g0052 688 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 610 653 - -
Amo05g0052 688 ProSitePatterns Zinc finger C2H2 type domain signature. 551 571 IPR013087 -
Amo05g0052 688 SUPERFAMILY ENTH/VHS domain 35 159 IPR008942 -
Amo05g0052 688 SMART 558neu5 36 158 IPR006569 -
Amo05g0052 688 MobiDBLite consensus disorder prediction 646 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0052 Amo-Chr5 569207 573313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0052 486 653 C2H2 Transcription Factor Family AT4G04885 48.558 2.19e-52 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo05g0052 CID 2.5e-11 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0052 K14400 - aip:107640327 545.043