Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0050 ATGATGGATTTACAAGATTATTGGATATTAAGATTGGTTTTTGTTGTATATGTTCTTTGTGTCTACATATTTATCAGATCAGCTTCTGCAAGTGAAGGGTTTGAGAGCATAGCATGCTGTGCTGATTCAAATTATACAGATCCAGTGACCACCTTAAATTACACAACAGATTACAGTTCTTTCCCTGATAAGAAAAGTTGCAGGCACCTATCTGAAACCGTGTTACACCAAATTAGAGACGAAAATTTTCGATTGTTTGATATAAATGAGGGAAAGAGATGTTACAATTTGCCAACAACTCCTAACAAAGTGTATCTGATAAGGGGCATATTTCCCTTTAAGAATTCATCAAATTCTTTCTTTGATGTTTCAGTAGGGGTAACTCAATTAAGCAGAGTGAGATCATTCAGGTCTCAGGACTTAGAAATAGAGGGAGCTTTCAGGGCCACACAAAACTTCACAGACTTCTGCTTAGTGAAAAGGGTGGGTAGTCCCTATATTTCGCAGCTCGAATTAAGGCCACTTCATGAAGAGTACCTGCAAGGTTTACCTGCTAGTCTTCTGAAACTGATAACCAGAAATAACCTTGGAGGCAACATCAGTTTCAGGTACCCTGTTGACAAGAGTGATAGAATATGGAAAGAAACTTCAAGTTCATCATCATCAGCTCTTGCATTATCTTTAAACATCACCAATTTTGATCCCAAAACTAGTATCTTCCCTCCCCTGCAAGTCCTACAAACTGCTCTTACCCACTCTGAGAGGTTGGAGTTCATCCACAATGTCCTCAACACCACGGATTATGAATATCGCATGTTTCTCTATTTCCTTGAATCAAATAGTACTCTCAAAGCAGGACAAAGAGTGTTTGACATCTTTGTTAACAGTGAGATCAAAGAGGGAAGATTTGACATATTGAATGGAGGGTCCAACTACAGATACACTCTCTTAAATGTATCAGCAAAAGGATCATTGAACCTAACCTTGGCCAAGGCATCTGGTTCCGAGAATGGACCACTTCTGAATGCTTATGAGATCATGCAGGTACACCCATGGATTGAAGGGACCAACCAAACAGATGTGGAAGTGATTAAAAAGGTAAGAGAACAGTTATTGGTGCAAAACCAAGACAATAAAGTGCTGAAGAGTTGGAGTGGAGACCCTTGTATTCTTTCCCCATGGCATGGAATAACATGTGATCATTCAAGTGGTCCATCTGTTATCACTGATTTGGATCTTTCCTCCAGTGATCTCAAAGGACCAATTCCTTCCAGTGTCACTGAGATGACCAACTTGAGAACACTGAACCTGAGCCACAATAGCTTCACTGGTGAAATCCCCTCCTCATTTCCACTTTCTTCCTTGTTGACATCAATAGATGTGAGTTACAATGACTTAGAGGGATCCCTTCCAGAATCCATTTCCTCACTGCCAAATTTAAAAACACTATATTTTGGTTGCAATGAACATTTGAAGGAAGACATTCCACCAAAATTGAGCAGTTCACTAATCCAGACAGATGGCGGAAGATGCAAGGAAGAAGACTCCAGACTTGATCAAGTAGTGGTTATTAGTGTGGTTACATGTGGATCACTATTGATTACTTTGGTTATTGGAGTTATTTTTGTTTGCTGTTATAGACATAAACTAATTCCATGGGAAGGATTTGTTGGAAAGAGATACCCAGTGACAACAAACTTAATTTTCTCTTTGCCAAGCAAAGATGACTTCTTCATAAAGTCTGTGTCAATTCAAGCATTCACTTTGGAATATATAGAGGAGGCAACAGAGAAGTACAAGACGTTGATAGGTGAGGGAGGGTTTGGTCCAGTTTACCGGGGCATGCTAGACGATGGTCAAGAAGTGGCAGTGAAAGTCCGGTCAGCCACGTCGACTCAGGGAACTCGAGAATTTGATAATGAGCTAAACTTACTCTCTGCAATACAGCATGAGAACCTTGTGCCTCTTATTGGTTACTGCAATGAAAAGGATCAACAGATTCTCGTGTACCCTTTTATGTCCAATGGCTCTTTGCAGAATAGACTATATGGGGAACCAGCAAAGAGAAAAATATTAGACTGGCCAACTAGACTCTCAATCGCACTTGGTGCAGCTCGAGGGTTGGCATATCTTCACACATTTCCGGGACGTCCTGTAATACACAGGGACATAAAATCTAGCAATATACTCCTGGATCATAGCATGTGTGCAAAGGTTGCAGATTTTGGGTTCTCAAAATATGCTCCACAGGAAGGAGACAGTAATGTTTCACTTGAAGTAAGAGGAACTGCGGGCTATTTGGATCCAGAGTACTATACAACCCAACAGCTATCGGAAAAGAGTGATGTCTTCAGCTTTGGTGTGGTCCTACTTGAAATTGTGAGTGGTCGAGAACCTCTCGACATAAAGAGGCCACGAAATGAGTGGAGCTTGGTTGAATGGGCTAAGCCATACATAAGAGCATCAAAGATAGAGGAAATTGTGGATCCTGGAATCAAGGGAGGATACCATGCAGAAGCAATGTGGAGAGTGGTGGAAGTGGCACTGCAATGTATTGAACCATTCTCCGCGTACAGGCCATGCATGGATGACATTGTCCGTGAGTTGGAGGATGCTCTGATCATAGAAAACAATGCATCGGAATACATGAAGTCCATAGACAGCCTCGGAGGATCGAACCGCTACTCTTTCGTCATGGATAAGAGGGTTCCGCCCTCTACTTCATCTACTGCAGAATCTACCATCACATCACAAACCTTGTCCCTCCCACAACCAAGATAG 2781 0.4157 MMDLQDYWILRLVFVVYVLCVYIFIRSASASEGFESIACCADSNYTDPVTTLNYTTDYSSFPDKKSCRHLSETVLHQIRDENFRLFDINEGKRCYNLPTTPNKVYLIRGIFPFKNSSNSFFDVSVGVTQLSRVRSFRSQDLEIEGAFRATQNFTDFCLVKRVGSPYISQLELRPLHEEYLQGLPASLLKLITRNNLGGNISFRYPVDKSDRIWKETSSSSSSALALSLNITNFDPKTSIFPPLQVLQTALTHSERLEFIHNVLNTTDYEYRMFLYFLESNSTLKAGQRVFDIFVNSEIKEGRFDILNGGSNYRYTLLNVSAKGSLNLTLAKASGSENGPLLNAYEIMQVHPWIEGTNQTDVEVIKKVREQLLVQNQDNKVLKSWSGDPCILSPWHGITCDHSSGPSVITDLDLSSSDLKGPIPSSVTEMTNLRTLNLSHNSFTGEIPSSFPLSSLLTSIDVSYNDLEGSLPESISSLPNLKTLYFGCNEHLKEDIPPKLSSSLIQTDGGRCKEEDSRLDQVVVISVVTCGSLLITLVIGVIFVCCYRHKLIPWEGFVGKRYPVTTNLIFSLPSKDDFFIKSVSIQAFTLEYIEEATEKYKTLIGEGGFGPVYRGMLDDGQEVAVKVRSATSTQGTREFDNELNLLSAIQHENLVPLIGYCNEKDQQILVYPFMSNGSLQNRLYGEPAKRKILDWPTRLSIALGAARGLAYLHTFPGRPVIHRDIKSSNILLDHSMCAKVADFGFSKYAPQEGDSNVSLEVRGTAGYLDPEYYTTQQLSEKSDVFSFGVVLLEIVSGREPLDIKRPRNEWSLVEWAKPYIRASKIEEIVDPGIKGGYHAEAMWRVVEVALQCIEPFSAYRPCMDDIVRELEDALIIENNASEYMKSIDSLGGSNRYSFVMDKRVPPSTSSTAESTITSQTLSLPQPR* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0050 926 PANTHER OS07G0107800 PROTEIN-RELATED 128 887 - -
Amo05g0050 926 Gene3D - 189 350 - -
Amo05g0050 926 SMART serkin_6 597 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0050 926 Gene3D Ribonuclease Inhibitor 360 511 IPR032675 -
Amo05g0050 926 ProSiteProfiles Leucine-rich repeat profile. 431 453 IPR001611 GO:0005515
Amo05g0050 926 Pfam Malectin-like domain 41 349 IPR024788 -
Amo05g0050 926 Gene3D Phosphorylase Kinase; domain 1 571 672 - -
Amo05g0050 926 MobiDBLite consensus disorder prediction 901 926 - -
Amo05g0050 926 MobiDBLite consensus disorder prediction 902 926 - -
Amo05g0050 926 CDD STKc_IRAK 603 870 - -
Amo05g0050 926 SUPERFAMILY L domain-like 379 500 - -
Amo05g0050 926 SUPERFAMILY Protein kinase-like (PK-like) 577 869 IPR011009 -
Amo05g0050 926 PANTHER OS05G0525400 PROTEIN 128 887 - -
Amo05g0050 926 Gene3D Transferase(Phosphotransferase) domain 1 673 886 - -
Amo05g0050 926 ProSitePatterns Serine/Threonine protein kinases active-site signature. 719 731 IPR008271 GO:0004672|GO:0006468
Amo05g0050 926 Pfam Leucine Rich Repeat 431 450 IPR001611 GO:0005515
Amo05g0050 926 ProSiteProfiles Protein kinase domain profile. 597 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0050 926 Pfam Protein tyrosine and serine/threonine kinase 600 869 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0050 Amo-Chr5 546029 552818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0050 18 876 Receptor kinase-like Gene Family AT1G67720 34.521 4.12e-135 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Amo05g0050 Malectin_like 2.4e-47 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0050 - - aip:107642298 1796.94