Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0045 ATGGGAAGAGGGAAGATTGTGATTCGGAGGATCGATAATTCGACGAGCAGGCAAGTTACTTTCTCGAAGAGGAGAAAGGGTTTGATCAAGAAAGCTAAGGAGCTTGCTATCCTCTGTGATGCAGAAGTTGGTCTTGTTATATTCTCCAGCACTGCAAAACTTTATGAATATGCAAACACAAGCATGAAATCAGTGATCGAGAGATATAACTCATGCAAGGAGGAAGAACAACAACTCATAAATCCAGAATCTGAGGTTAAGTTTTGGCAAAGGGAGGCAGAAATTTTAAGGCAGCAACTACAGAACCTCCAAGAAAATCATAGGCAATTGATGGGGCAACATCTTTATGGTTTGAGTGTGAGAAACCTACAAGATCTAGAGAACCAACTAGAAATGAGTCTCCAAGGTGTCCGAATGAAAAAGGAACAAATTCTAACAGAAGAAATCAAGGAGCTGAACCGAAAGGGCAACCTCATCCATCAGGAAAATTTGGAACTTTTTAAGAAAGTAAACCTGATGCAGGAGGAAAACACACAATTATGCAGAAAGGTGTATGGCACAAGCGAAATAGAAGCAACAAGCAGAAATGGATTCATTCCAATTCCATATGGTATTCAAGTAGGAGGAGGAGGCTCACAGACATTAGTCCAACTTCAGTTATGCCAGCCAGATCAAGAAGCCTATGAGACTTCAACAAGTGCAACAAGATGA 711 0.4079 MGRGKIVIRRIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTAKLYEYANTSMKSVIERYNSCKEEEQQLINPESEVKFWQREAEILRQQLQNLQENHRQLMGQHLYGLSVRNLQDLENQLEMSLQGVRMKKEQILTEEIKELNRKGNLIHQENLELFKKVNLMQEENTQLCRKVYGTSEIEATSRNGFIPIPYGIQVGGGGSQTLVQLQLCQPDQEAYETSTSATR* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0045 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo05g0045 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo05g0045 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo05g0045 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 234 - -
Amo05g0045 236 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo05g0045 236 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Amo05g0045 236 Coils Coil 123 143 - -
Amo05g0045 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo05g0045 236 Coils Coil 86 113 - -
Amo05g0045 236 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo05g0045 236 Gene3D - 13 113 IPR036879 GO:0003677|GO:0046983
Amo05g0045 236 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 234 - -
Amo05g0045 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Amo05g0045 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo05g0045 236 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Amo05g0045 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0045 Amo-Chr5 509445 518113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0045 1 234 MADS-box Gene Family AT2G22630 62.393 6.23e-101 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo05g0045 K-box 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0045 K09264 - gmx:100795778 351.673