Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0041 ATGAAGGTGGTATACGTTGCACTGCTTTTCTTCTTGCTGGGTGCATCTTCTGTGAAGAGCTCATTTAGAACATCGCCGGTTATTCTGAATACTGAAAATCCTGATCGGGTGATCCTTCAAAACGGTATCGTTTCCATCACTTTGGCAAAGCCTGGGGGCTATATTCTTGAAATATCATATAATGGAATTGACACCATACTTGAATCTCGAAATGATAAAAAGGATAGAGGGTACGTGGACTTTGTCACAAATGAACCAGGAGAATCTGGCGGCGAACCAAAAACCGAGACGACAGATTTTAAAGTCATAGCACAGGACCAGAATATGGTGGAAGTTTCATTTACAAGAACATGGTCACCCTCAGATGGTGGTGTCCCCTTCAATATAGACATAAGGTATATATTGAGAAGAGGGGATTCTGGGTTTTATCCATATGTAATATTGGAACGTGTAGAGGGATTTCCAGCTGTGGAAATTGATCAAATTAGGATTGTTTTCAAGCTCGCCCGTGACAGGTTTCGTTATATGGCTATATCAAACACAAGGCAGAGGATGATGCCATCTATGGCAGATAGAGAAAATGGTCAAACCCTAGATTATCCTGAAGCCGTTCTCTTAACCAAGCCATTACAACGAAATTTTCTTAGAGAGGTGGATGACAAGTATCAATACTCAATTGAGACTCAAGACAACAAGGTTAACGGTTGGACAAGCCCATATTCTGAGCCACGTGTCGGTTTCTGGATCTTAACACCCAGCAATGAGTTCCGCAATTGTGGGCCTATCAAGCAAGATCTCACCTCTCATGTTGGCCCAATTGCCCTCTCGATGTTTGTGAGCAACCACTATGCTGGAAGGGAGGTAAATATGAAATTTCAGGAAGGGGAACTTTATAAGAAGGTTTTTGGCCCTGTTTTTATCTACCTCAACTCTGGTCCAAGTAATCAAAATTTGTGGTTAGATGCCGTACAAAAGCAATCCAATGAAGCCAAAAGCTGGCCATATAATTTCCCTCGATCAATCGATTTCATTCCAGCCAATAAACGTGGAACAATATCAGGAAGGTTGCAAGTCCAAGATAGGTTCATGAAAGGACAGAGCCTTCAAAATGCTAACAGTGCGTACGTTGGTTTAGGTTTACCTGGAGATCCTGGATCATGGCAGAAAGAAAGCAAGGGTTATCAATTTTGGACTCGAACCGACAAGAATGGTAATTTTGTAATCAACAATATTGTACCCGGTGATTACAATTTGTATGCATGGGTTCCTGGTTTTATTGGAGACTACAAATACAACAAGACAATAACCATCACACCAGGATGCTCCACCAACTTGAATACACTTGTGTATAATCCTCCAAGAAATGGTCCAACACTTTGGGAGATTGGAATTCCTGATCGCTTAGCTGCTGAATTTTTTGTGCCAGACGCTAACCCTAAGCTCATCAACAACTTATACAGGAATCACACCATTGACAAATTTAGGCAATATGGATTGTGGGAACGTTACGCCGAATTACATCCACATAATGATCTTGTATTCGTTGTTGGTGCTAATGACTATCGCAAGGATTGGTACTTTGCTCATGTTACAAGGAAAATAGGAGAGAAGAAATACAGACCATGCACATGGCAAATTGTATTTGACCTTCCAAATGTCACATCCAGAGGAATATACACACTACAACTGGCTTTGGCATCCTCAACTGAAGCTGAATTGCAGGTTTGGTTCAATGACCCTAAAAATGCAAATCCTGCACACTTCACAACAGGACAAGTAGGAGGAGACAATGCCATAGCAAGGCATGGCATCCATGGATTGTATAGGCTCTATAGCATAGGTGTAAGTGGGAAGCATTTGGTGAAAGGAAAGAACATCATCTATTTGAAGCAATCTAAAGCTTTAACTGCATTTGAAGGAGTCATGTATGATTATATCCGCTTAGAAGGTCCTCCACCTTCATCCCCTGGATTTGATCACTAA 1983 0.4135 MKVVYVALLFFLLGASSVKSSFRTSPVILNTENPDRVILQNGIVSITLAKPGGYILEISYNGIDTILESRNDKKDRGYVDFVTNEPGESGGEPKTETTDFKVIAQDQNMVEVSFTRTWSPSDGGVPFNIDIRYILRRGDSGFYPYVILERVEGFPAVEIDQIRIVFKLARDRFRYMAISNTRQRMMPSMADRENGQTLDYPEAVLLTKPLQRNFLREVDDKYQYSIETQDNKVNGWTSPYSEPRVGFWILTPSNEFRNCGPIKQDLTSHVGPIALSMFVSNHYAGREVNMKFQEGELYKKVFGPVFIYLNSGPSNQNLWLDAVQKQSNEAKSWPYNFPRSIDFIPANKRGTISGRLQVQDRFMKGQSLQNANSAYVGLGLPGDPGSWQKESKGYQFWTRTDKNGNFVINNIVPGDYNLYAWVPGFIGDYKYNKTITITPGCSTNLNTLVYNPPRNGPTLWEIGIPDRLAAEFFVPDANPKLINNLYRNHTIDKFRQYGLWERYAELHPHNDLVFVVGANDYRKDWYFAHVTRKIGEKKYRPCTWQIVFDLPNVTSRGIYTLQLALASSTEAELQVWFNDPKNANPAHFTTGQVGGDNAIARHGIHGLYRLYSIGVSGKHLVKGKNIIYLKQSKALTAFEGVMYDYIRLEGPPPSSPGFDH* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0041 660 Gene3D - 344 448 - -
Amo05g0041 660 SUPERFAMILY Starch-binding domain-like 344 448 IPR013784 GO:0030246
Amo05g0041 660 CDD RGL4_N 30 318 - -
Amo05g0041 660 Gene3D - 29 325 IPR014718 GO:0030246
Amo05g0041 660 CDD RGL4_C 460 649 - -
Amo05g0041 660 Pfam Rhamnogalacturonate lyase family 27 217 IPR010325 -
Amo05g0041 660 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 32 652 - -
Amo05g0041 660 SUPERFAMILY Galactose mutarotase-like 30 314 IPR011013 GO:0003824|GO:0005975|GO:0030246
Amo05g0041 660 Pfam Polysaccharide lyase family 4, domain III 458 648 IPR029411 -
Amo05g0041 660 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 32 652 - -
Amo05g0041 660 CDD RGL4_M 348 448 IPR029413 -
Amo05g0041 660 SUPERFAMILY Galactose-binding domain-like 455 649 IPR008979 -
Amo05g0041 660 Gene3D - 456 649 - -
Amo05g0041 660 Pfam Polysaccharide lyase family 4, domain II 373 445 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0041 Amo-Chr5 464084 470449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0041 35 651 Polysaccharide Lyase AT1G09890 53.920 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0041 K18195 - gmx:100776664 849.351