Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0040 ATGGCAACACAAGCTGAATTTGAGCATCCTAGAAAGGCCTTTGGATGGGCAGCTAGGGATACTTCTGGTGTTCTCTCACCTTTTAATTTCTCTAGAAGGGAAACGAGAGAGAATGACGTGGCATTCAAAGTTTTGTATTGTGGGGTATGTCACTCTGACATACACATGCTGAAAAATGAATGGGGCTTTTCCCTATATCCAATAGTTCCTGGGCATGAGATTATAGGCACAGTGACAGAGGTGGGAAGCAAGGTAAACAAGTTCAAAGTTGGGGACAAAGTTGGTGTTGGATGCATGGTTGGTTCTTGCCGCAAAAACACATGCAGAAACTGTAATGATGCTCTAGAGAACTATTGTCCACAAATGATTCTCACATATGGTGTCAAAGACACTGATGGCACCATCACCTATGGGGGCTATTCTGACTTAATGGTTGCTGATGAAAACTTTGTGGTTCGAATTCCTCAAGGCTTTCCTCTTGATGCTGCTGCTCCTCTCCTTTGTGCCGGGATCACAGTGTATAGCCCTCTTAGATATTATGGGCTTGACAAGCCTGGACTCCATGTGGGTGTGGTTGGTCTTGGTGGGTTAGGTCACATGGCTGTTAAGTTTGCCAAAGCTTTTGGGGTTAAGGTAACGGTCATCAGCACCTCCCCTGAGAAAAAGGACGAAGCAATTCAACTTTTAGGAGCTGATCACTTCCTTATAAGTCGTGACCATGATCAGATGCAGGCTGCAACGGGCAGTTTTGATGGTATTATTGACACAGTTTCTGCCTTCCATCCTTTATTGCCTCTAATTAGTTTATTGAAGTGTCACGGGAAGCTTGTAATGGTTGGTGCCCCGGAGAAGCCTCTAGAGCTGCCAGTATTTCCTTTAATTATGGGAAGAAAGACAGTTGCCGGTAGTACCATCGGAGGGATGAAAGAGACACAAGAGATGATTGATTTTGCTGCTAAACATAACGTGAAACCTGAAATTGAGGTTATTCCTATTGATTATATTAACACAGCATTGGAGCGTCTACTCAAAGCTGATGTCAAATATCGTTTTGTCATCGACATTGGAAACACTCTAAAACCTTCCACTTGA 1092 0.4368 MATQAEFEHPRKAFGWAARDTSGVLSPFNFSRRETRENDVAFKVLYCGVCHSDIHMLKNEWGFSLYPIVPGHEIIGTVTEVGSKVNKFKVGDKVGVGCMVGSCRKNTCRNCNDALENYCPQMILTYGVKDTDGTITYGGYSDLMVADENFVVRIPQGFPLDAAAPLLCAGITVYSPLRYYGLDKPGLHVGVVGLGGLGHMAVKFAKAFGVKVTVISTSPEKKDEAIQLLGADHFLISRDHDQMQAATGSFDGIIDTVSAFHPLLPLISLLKCHGKLVMVGAPEKPLELPVFPLIMGRKTVAGSTIGGMKETQEMIDFAAKHNVKPEIEVIPIDYINTALERLLKADVKYRFVIDIGNTLKPST* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0040 363 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Amo05g0040 363 SUPERFAMILY GroES-like 9 201 IPR011032 -
Amo05g0040 363 Pfam Alcohol dehydrogenase GroES-like domain 38 153 IPR013154 -
Amo05g0040 363 Gene3D - 169 325 - -
Amo05g0040 363 SMART PKS_ER_names_mod 23 353 IPR020843 GO:0016491
Amo05g0040 363 PANTHER ALDEHYDE REDUCTASE 1 362 - -
Amo05g0040 363 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 159 324 IPR036291 -
Amo05g0040 363 Pfam Zinc-binding dehydrogenase 196 319 IPR013149 -
Amo05g0040 363 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 1 362 - -
Amo05g0040 363 CDD CAD1 14 354 - -
Amo05g0040 363 Gene3D - 16 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0040 Amo-Chr5 461952 464563 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0040 11 362 Monolignol Biosynthesis Gene Families AT4G37990 70.455 4.21e-172 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0040 - K23232 gmx:100816901 598.586