Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0030 ATGAAGAGAATGGATTCGAAAAGCGATAACGGAAGAGAGTTTTCTAGCGACGACGACGCATCTCCGAGATGTGTAATGGAAGCTCCTGTTTCTGAAACAGAATCCGACTCCACCACTACCAGCAGCAGCAGCAGCAGCTCCTTCTCCCCGGAGAAGCTTCCGCTTCCGCTTCCGCCGCCGCCAGCGGTGGCAGCGGCGGCGCTGAGAAAAACGAATTCGAAGGAGAGCAACTTGCAGCAGTGGAAGACGATGATCGACGTTTTCAAGTTCAAGAGCGTTAAGAAATTGACGACGATTCCTCTGCTCTCTGCGGGGAACGAAATCACGAGGAAGGGTTTTGCTAAGAAACTGGCTCGGATTCGAAGCGCCGAAGATAGCATCGACATAGGTGTTATTCCGACGAAGCCTTCTTGGAGGAACTTCGATTACGCGGAACTCGCAGCTGCAACTAACGATTTCAACCCAGAGAACCTGGTTGGTAAAGGTGGCCATGCAGAAGTGTACAAAGGGCACCTACCTGATGGGAAAGTTATAGCAGTCAAGAGACTAATGAAGAATGCCAAGGATGCTGGGGACAGAGCTGGTGATTTCTTGACAGAACTTGGGATCATTGCACACATAAACCACCCAAATGCAACACGCCTTGTTGGGTTTGGGATTGAACGCGGTCACTACTTTGTACTAGAATATGCTCCACATGGCAGCCTTTCTTCGTTGCTCTTTGGTTCTGAATGCTTGGAGTGGAAGACAAGGTTCAAGGTCTCCATTGGAGTGGCAGAAGGGTTGCAGTATCTGCATCAAGATTGTCCTAGAAGAATCATTCATAGGGATATCAAAGCCTCTAACATACTACTCAATGAAAATTATGAAGCGGAGATTTCAGATTTTGGATTGGCAAAGTGGCTTCCAACTAATTGGGCTCACCACGTTGTCTTCCCAATAGAAGGCACATTTGGGTATTTGGCTCCAGAGTACTTCATGCATGGAGTTGTGGATGAGAAGACTGATGTATTTGCATTTGGGGTTTTGTTACTGGAGATCATAACTGGTCGTCGTGCTGTCGATTCAGATAGTAGGCAAAGCCTTGTGATCTGGGCTAAGCCACTGCTGGATACAATGAATGTGACGGAAATAGCAGACCCCAGATTAGAAGGGGAATATGATCCTATTGAAATGAAGCATGCCATGGTAACAGCTTCCTTGTGTGTCCACCAGATATCCTCCAAGAGACCATTCATGAATCAGGTTGTACCCTTACTCAAGGGTGAAGTAGCAGCTATTGAACTCAAACAAAACTCACCAGCAACAAGATCACTCTTGTTAGAGGCATGTGACCTTGAGGACTATACTTGCTCTAGTTACTTGAAGGATCTCAACCGCCATAGGGAGTTAATCAATGAGTGA 1404 0.4701 MKRMDSKSDNGREFSSDDDASPRCVMEAPVSETESDSTTTSSSSSSSFSPEKLPLPLPPPPAVAAAALRKTNSKESNLQQWKTMIDVFKFKSVKKLTTIPLLSAGNEITRKGFAKKLARIRSAEDSIDIGVIPTKPSWRNFDYAELAAATNDFNPENLVGKGGHAEVYKGHLPDGKVIAVKRLMKNAKDAGDRAGDFLTELGIIAHINHPNATRLVGFGIERGHYFVLEYAPHGSLSSLLFGSECLEWKTRFKVSIGVAEGLQYLHQDCPRRIIHRDIKASNILLNENYEAEISDFGLAKWLPTNWAHHVVFPIEGTFGYLAPEYFMHGVVDEKTDVFAFGVLLLEIITGRRAVDSDSRQSLVIWAKPLLDTMNVTEIADPRLEGEYDPIEMKHAMVTASLCVHQISSKRPFMNQVVPLLKGEVAAIELKQNSPATRSLLLEACDLEDYTCSSYLKDLNRHRELINE* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0030 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Amo05g0030 467 PANTHER OS08G0249100 PROTEIN 12 467 - -
Amo05g0030 467 MobiDBLite consensus disorder prediction 31 51 - -
Amo05g0030 467 Pfam Protein kinase domain 156 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0030 467 Gene3D Transferase(Phosphotransferase) domain 1 232 436 - -
Amo05g0030 467 SMART serkin_6 153 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0030 467 Gene3D Phosphorylase Kinase; domain 1 118 230 - -
Amo05g0030 467 MobiDBLite consensus disorder prediction 1 20 - -
Amo05g0030 467 ProSiteProfiles Protein kinase domain profile. 153 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0030 467 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 12 467 - -
Amo05g0030 467 ProSitePatterns Protein kinases ATP-binding region signature. 159 181 IPR017441 GO:0005524
Amo05g0030 467 SUPERFAMILY Protein kinase-like (PK-like) 137 429 IPR011009 -
Amo05g0030 467 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0030 Amo-Chr5 323022 327941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0030 141 416 Trihelix Transcription Factor Family AT1G68690 45.965 2.71e-71 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Amo05g0030 Pkinase 2.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0030 - - gmx:100775930 672.93