Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0029 ATGGCTCGTGCAACTAACTGGCTATCGTTTTCGCTTTCTCCAATGGAAATGCTAAGGACATCCGAGCCACAGTTTCCCCAATACGACGCCGCTTCAGCCACCACCAACTACTTCGTAGATAACTTCTACGCCAACGGTTGGGGGAACCAGGGGAAGGAACAGCAACCGCACGGCATGGTGGAGCAGTCGCTATTTATGACGAGCTACGTGGACTCGTCGCAGAACCTCAGTCACGCGCCGTCGCATGCTGCGGCGACGACTGTGGTGCCGAAGCTGGAGGATTTTCTCGGCGATTCGTCGTCGTCGATGATGCGATACTCCGATAGCCAGACGGAGACGCAGGATTCGTCGCTGACGACGCACATGTACGACCACGGCGGCGCGTACTTCGGCGGCGAGCACCAAGATCTGAAGGCCATTACTGGATTTCAAGCTTTCTCCGGCGCTAACTCGGGGTCTGAGGTGGACGACTCAGCCTCCATCGGTAGGGCGCAGCACGGCGGTGGGAACGAGTTCGGAACTCGCTCCGTTGATTCCTCCGGGAACGAGCTGGCGTTCTCCAACGGCGGCGCTGCCGCTACCGCTACCGGAGCTTTGTCACTAGGCGTAGCGCAGAGTTCGGCGGAGAAGGCCGTCGTAGTATCCGATTCCGATAGTTCGAAGAAGATCGTCGATACATTTGGCCAGCGAACTTCAATTTACAGAGGAGTCACTAGACACCGATGGACTGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCCAGAAAAGGGCGTCAAGTCTACTTGGGTGGATATGACAAAGAAGAAAAGGCCGCGAGAGCTTATGATTTGGCAGCTTTAAAGTATTGGGGTCCCACTGCTACCACCAACTTCCCTGTTTCCAATTACCCAAAGGAACTGGAGGAGATGAAACATGTAACAAAGCAAGAATTCATTGCATCACTGAGAAGGAAAAGTAGTGGCTTTTCCAGGGGAGCTTCCATATACAGAGGTGTGACAAGGCATCACCAACAAGGTAGGTGGCAAGCAAGAATTGGTCGTGTTGCCGGAAACAAAGATCTTTACTTGGGAACATTTGCAACTGAAGAGGAAGCTGCTGAGGCATATGATATAGCAGCTATAAAGTTCCGAGGTGCAAATGCAGTAACCAACTTTGAGATGAGCAGGTACGATGTTGATGCCATAATGAAGAGCTCTCTTCCTGTTGGCGGCGCGGCGAAACGCTTGAAACTCTCCCTAGAATCAGAGCAGAAGTCTGCTATCAACGCCATCACCACCGGCCAGCAGCAACAACCAGTGTGTGCAAACATGAGTGGCAGCAATATCAACTTCTCATCAACCATACATCAGCCAATTGCTTCCATCCCCTGCCGAATCCCATATGATTCCGCGCCAGCTTATTATCACCACAACCTCTTCCACCATTTCCACCCCACTAACGGTGTAGAAACCGCCGTAACTTCTGCCAATGCCGCCGGACTGACTGCACCACCAGTGGCTGCAGCAGCACCTGAGTTCTTCATATGGCCTCCCCAGTCCTATTGA 1566 0.5268 MARATNWLSFSLSPMEMLRTSEPQFPQYDAASATTNYFVDNFYANGWGNQGKEQQPHGMVEQSLFMTSYVDSSQNLSHAPSHAAATTVVPKLEDFLGDSSSSMMRYSDSQTETQDSSLTTHMYDHGGAYFGGEHQDLKAITGFQAFSGANSGSEVDDSASIGRAQHGGGNEFGTRSVDSSGNELAFSNGGAAATATGALSLGVAQSSAEKAVVVSDSDSSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYPKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMSRYDVDAIMKSSLPVGGAAKRLKLSLESEQKSAINAITTGQQQQPVCANMSGSNINFSSTIHQPIASIPCRIPYDSAPAYYHHNLFHHFHPTNGVETAVTSANAAGLTAPPVAAAAPEFFIWPPQSY* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0029 521 SUPERFAMILY DNA-binding domain 334 395 IPR016177 GO:0003677
Amo05g0029 521 Pfam AP2 domain 233 291 IPR001471 GO:0003700|GO:0006355
Amo05g0029 521 Pfam AP2 domain 335 385 IPR001471 GO:0003700|GO:0006355
Amo05g0029 521 Gene3D AP2/ERF domain 335 395 IPR036955 GO:0003700|GO:0006355
Amo05g0029 521 Gene3D AP2/ERF domain 233 301 IPR036955 GO:0003700|GO:0006355
Amo05g0029 521 SUPERFAMILY DNA-binding domain 232 301 IPR016177 GO:0003677
Amo05g0029 521 ProSiteProfiles AP2/ERF domain profile. 335 393 IPR001471 GO:0003700|GO:0006355
Amo05g0029 521 SMART rav1_2 335 399 IPR001471 GO:0003700|GO:0006355
Amo05g0029 521 SMART rav1_2 233 305 IPR001471 GO:0003700|GO:0006355
Amo05g0029 521 CDD AP2 334 395 IPR001471 GO:0003700|GO:0006355
Amo05g0029 521 PRINTS Ethylene responsive element binding protein signature 234 245 IPR001471 GO:0003700|GO:0006355
Amo05g0029 521 PRINTS Ethylene responsive element binding protein signature 375 395 IPR001471 GO:0003700|GO:0006355
Amo05g0029 521 MobiDBLite consensus disorder prediction 154 180 - -
Amo05g0029 521 ProSiteProfiles AP2/ERF domain profile. 233 299 IPR001471 GO:0003700|GO:0006355
Amo05g0029 521 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 518 - -
Amo05g0029 521 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 5 518 - -
Amo05g0029 521 CDD AP2 232 301 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0029 Amo-Chr5 315555 321048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0029 63 521 AP2-EREBP Transcription Factor Family AT5G10510 57.974 4.34e-167 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Amo05g0029 AP2 9.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0029 K09285 - gmx:100775390 711.064