Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0028 ATGGATGAAATTCAGAGGGAAAAAGTCTATGTTGGTGTTGGAATTGATGTGCAAGATGGATTCAAGGTTTTGAATTGGGTTCTCAAGAATTGGAACAATAATAATTCTCATCCAATTTCTATTGTTATTCTCCATGTTGCTCACAACTTCTCCAATGATTATGTTTCTACACCATTTGGGAAACTTCCAGCAAGATCTGTGAATGAAGAGAAGCTTGAAGTTCTAAAGAAGTATGAAGAAGATAAAATCAAGAAGCTCTTTTCCAAGTATATTGCTTATTGTGATAAAGCCAAGGTGCCGGCAGAAATTCTTCAAGTTGAGAAAGTTGATGAACCTATCCAAAAGCGCATCCTAGATTTGATCTTTAGCCTTGGAATTACCAAATTGGTCATTGGCTTTTCATTCATGAAGCCCTCCTTGAAATCAAGAAGTGCCATAAGTGGATTGTTCTATGTTCACCAGCACAAACCATCATTCTGTGAATTGTTCATAGTTTGTGGTGGAGAACAAGTGTTCCTGAGATCAAAAAATGAAGAGAAAATCATGGAGGATGAAAATGGTGTCACGGTTGCAAGGTTAAAAGACAAGTCATCAGCAGTTACCCAGAACCAATGGGAATTTTATCTTCGAGAAATTGATAATTACTATCAAGAATTGTTGATGTCATACTCCAATTTGGATGAGAGAAGCTGTGTGCAAGAAAATGATGGTTCATCACAGATTGGTCCAATTGAGACAGGCGTCATTATTGAACAGAACAATTCTTCTTCTAATACGAGTGCTACAGAAAAAATTGAGATCCTACAAAATAAATTGAATGAAGCTCAAATGACCATCCAAATGAAGAAGAAAGAAGCCAAGGATCAAATAGAGAGGCGCACAAAAGCAGAATGGGCAATATGTTTATGCAATAGTAGGGCTGAAGAAGTTGAATCAAGAATAAAGGAAGAAGTGAGCGCAAGGGAAGAAATTAAGAAGGAAGTAGAGGAAGAAAAAGAACAAACGCAGGAGATTCGAATAGACGTAGAAGAGAGGAAGAGGAGGCTCAAGTCACTATCAGAGCTCCATTCCGAGCTCTCAAAGAGGGTGCACGTGTCCAAGATAGCCAAGTCACGTGCGGAGAGGCAGCTGGAGAAAGCGATTGCGGAGAGAGCGGAGATGGTGAGGGAGATAGAGGAGCTGAGGAGACAGAGGGACGTGCTCAACAGAAGGATCGAGTTCTGCAAACAGAAGGACGCAATTGGAATGGCCGCAAGGCTCATGAGCCAAGAGGAGGCGGCTGCGTGTGCTTTCAGGGAGTACTCCGAGGAGGAGCTGCGCCTGGCCACCGACAACTTTTCCGACAGATTGAGGTTCAAGTCCGGTGGAGATTGGAGCCATGTGTATAAAGGACGCATGCCTCATTCCACCGTTGCCATCAAGATGCTTGCTTCTTCTTTGTCCCTCCAAGATTTTCAATCTAAGGTGAGAATTCTTGGTGATATTAGGCAGCCTCATCTGATTGCTATGGTGGGCTTTTGCTCCGAGCCCAAATGCGTAGTATTCGAATACATGCACAACGGAAGCTTACGAGACATACTATTTTCTAGGAGAAGAAACCGGGCTTTAAAGTGGCATGATAGAATACGAATAGCTACAGAAGTTTGCTCGGGCCTAAGCTTTCTAAACTCAGTTAAACCAAGGCCCGCTATCCATTGTCACTTGACCCCATCCAACGTCCTCCTAGACCGGAACTATGTAGCCAAGATCACGGGCTTTGGGCTTGATGAGTGCAACGACGAGGAGTGTAACGTTGAGTCAGATATCCGGGCCTTGGGGGTGTTTTTGCTACACCTTTTAACAGGAAGAAATTGGGCCGGGCTTGTTGAGGAGGCGATGATAGTAGACACGGATAGAGAAGCATTTGTTGGGGTTCTTGATGAGACGGCCGGAGCATGGCCGTTGGATCTAGCTAAAGAGATAGCGGGCCTAGGGATGAGGTGCATGTCGAGGGGAGAGTTGAGTATTGGAGTGGTGATGGAGGAGCTGAGAGAGATTAGAAGAAAGGGTGATGAGATAGCAGCAAGAGAAGGGCGAAGAGTAATGAGGAGTGGAAGTGGTGCAGATAGAGATTGGTCAAGTGCTGTACCGAGTGTTTATCTTTGCCCTATACTTCAGGATGTAATGAAGAATCCACACGTGGCGGCAGATGGCTTTTCATACGAGCTTGAAGCAATACAACACTGGTTGCAAACGGGACATGACACGTCACCAATGACAAACTTAAGGCTTAAACACACATTCCTCACCCCTAATCACAGCCTTCGCTCCTTAATTGAAGATTGGCATACCAAGAATAACACATCATCTGCAGTTTTAAATTAG 2364 0.4391 MDEIQREKVYVGVGIDVQDGFKVLNWVLKNWNNNNSHPISIVILHVAHNFSNDYVSTPFGKLPARSVNEEKLEVLKKYEEDKIKKLFSKYIAYCDKAKVPAEILQVEKVDEPIQKRILDLIFSLGITKLVIGFSFMKPSLKSRSAISGLFYVHQHKPSFCELFIVCGGEQVFLRSKNEEKIMEDENGVTVARLKDKSSAVTQNQWEFYLREIDNYYQELLMSYSNLDERSCVQENDGSSQIGPIETGVIIEQNNSSSNTSATEKIEILQNKLNEAQMTIQMKKKEAKDQIERRTKAEWAICLCNSRAEEVESRIKEEVSAREEIKKEVEEEKEQTQEIRIDVEERKRRLKSLSELHSELSKRVHVSKIAKSRAERQLEKAIAERAEMVREIEELRRQRDVLNRRIEFCKQKDAIGMAARLMSQEEAAACAFREYSEEELRLATDNFSDRLRFKSGGDWSHVYKGRMPHSTVAIKMLASSLSLQDFQSKVRILGDIRQPHLIAMVGFCSEPKCVVFEYMHNGSLRDILFSRRRNRALKWHDRIRIATEVCSGLSFLNSVKPRPAIHCHLTPSNVLLDRNYVAKITGFGLDECNDEECNVESDIRALGVFLLHLLTGRNWAGLVEEAMIVDTDREAFVGVLDETAGAWPLDLAKEIAGLGMRCMSRGELSIGVVMEELREIRRKGDEIAAREGRRVMRSGSGADRDWSSAVPSVYLCPILQDVMKNPHVAADGFSYELEAIQHWLQTGHDTSPMTNLRLKHTFLTPNHSLRSLIEDWHTKNNTSSAVLN* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0028 787 CDD RING-Ubox_WDSUB1_like 713 754 - -
Amo05g0028 787 SUPERFAMILY Protein kinase-like (PK-like) 431 623 IPR011009 -
Amo05g0028 787 ProSiteProfiles U-box domain profile. 708 782 IPR003613 GO:0004842|GO:0016567
Amo05g0028 787 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 50-RELATED 5 778 - -
Amo05g0028 787 Coils Coil 307 362 - -
Amo05g0028 787 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 708 784 IPR013083 -
Amo05g0028 787 Pfam Protein tyrosine and serine/threonine kinase 456 592 IPR001245 GO:0004672|GO:0006468
Amo05g0028 787 Pfam U-box domain 709 780 IPR003613 GO:0004842|GO:0016567
Amo05g0028 787 Gene3D Transferase(Phosphotransferase) domain 1 432 664 - -
Amo05g0028 787 ProSiteProfiles Protein kinase domain profile. 447 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0028 787 SUPERFAMILY RING/U-box 697 780 - -
Amo05g0028 787 Coils Coil 258 292 - -
Amo05g0028 787 PANTHER OS02G0152300 PROTEIN 5 778 - -
Amo05g0028 787 SMART Ubox_2 712 775 IPR003613 GO:0004842|GO:0016567
Amo05g0028 787 Coils Coil 370 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0028 Amo-Chr5 275917 280443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0028 7 778 U-box Gene Family AT5G65500 49.937 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Amo05g0028 PK_Tyr_Ser-Thr 4.9e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0028 - - ahf:112747336 1488.4