Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0010 ATGGTACCGTTAACACAGCGAGTTCGAAATCACTATTACTCTGGAGCTCAAATTCTAAGGAGTTCTTCAATAACACCATATGATTACATCTTTACAAAGCCAAGATCAAAGGCAGCGGACAAAAAACAAGCAGCTGTAAAACACAGTCAAGCAGAAAAGAGACGCAGGATGAGAATCAACACTCAATATGAGGCCCTCAAAAACCTCTTCCAAAATAAAACCAAAACGGACAAGGCATCATTATTGGCAACTACTATTGAAATAGTTAAAAATTTGAGAAAAAATAGTATTCTACAGGAAGCTTCTAGTAGCTCAAAGAAGGAAATGAATAAGGTTACTAACCAGAAGAAAATGCAAGAAGCTTGTAGCCCAAGAAATGATGATGTGTTTCCTAGTTGGGAAGACAAGTGGAGTCTAAAACATGAAGAGGGTCTAATGAAGGCTACATTGAATTGTGAGGATAAGCCAGGATTGATGTCAACAATAGCAAAGGCAATGGGGTCAGTGGAAGCCAAGGTTGTAAAGGCTGAGATGGTGAATGTTGGAGGAAGAACTAGGGTTGTGTTGTGGGTCAAAGATTCCAATGATGATCGTAAAGGTGAAGAGATTCTCAAGAGGACACTCAGTACTCTCATGCAAAGGCCAGTCCCTAAAAAGAGGCGTTTTACTCAATAA 675 0.3956 MVPLTQRVRNHYYSGAQILRSSSITPYDYIFTKPRSKAADKKQAAVKHSQAEKRRRMRINTQYEALKNLFQNKTKTDKASLLATTIEIVKNLRKNSILQEASSSSKKEMNKVTNQKKMQEACSPRNDDVFPSWEDKWSLKHEEGLMKATLNCEDKPGLMSTIAKAMGSVEAKVVKAEMVNVGGRTRVVLWVKDSNDDRKGEEILKRTLSTLMQRPVPKKRRFTQ* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0010 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 92 IPR011598 GO:0046983
Amo05g0010 224 ProSiteProfiles ACT domain profile. 147 224 IPR002912 -
Amo05g0010 224 CDD ACT_UUR-ACR-like 149 213 - -
Amo05g0010 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 36 94 IPR036638 GO:0046983
Amo05g0010 224 Pfam Helix-loop-helix DNA-binding domain 46 92 IPR011598 GO:0046983
Amo05g0010 224 MobiDBLite consensus disorder prediction 100 125 - -
Amo05g0010 224 PANTHER TRANSCRIPTION FACTOR BHLH131 23 219 - -
Amo05g0010 224 MobiDBLite consensus disorder prediction 100 120 - -
Amo05g0010 224 Gene3D - 34 95 IPR036638 GO:0046983
Amo05g0010 224 PANTHER TRANSCRIPTION FACTOR BHLH30 23 219 IPR045847 GO:0003700|GO:0006355
Amo05g0010 224 SUPERFAMILY ACT-like 149 211 IPR045865 -
Amo05g0010 224 SMART finulus 49 98 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0010 Amo-Chr5 100346 101764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0010 48 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 33.140 1.76e-19 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo05g0010 HLH 4.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0010 - - adu:107487037 437.958