Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0003 ATGGAATTCGATGAGCAAGAGGAGCAAGAAGAAGAGCTGTGTGTGCCAGGAGGAACGGGTTATGACCCTCTTGGAAACCCGACCCGGGTTAAAATGTCCGGTTCGGAACCCATGTTGGTGGTTCAACCCATGACCGTGAGGAACAACAACAACAACAACAGCAGCAGCAACATGGTGAAGCCAAGATACAGAGAGTGTTTGAAGAACCATGCCGTGGGGATCGGCGGACACGCACTCGACGGTTGCGGCGAGTTCATGCCCGCCGGCACGGAGGGAACCCTCGACGCACTCAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGAGACTGAGCTCGCCGGAGCAGGACCAGGAGGAGGAGGACCGTATCTCCTGACTCACCACCCCCACCACCACCAGCCGCCGCCGTTTGCGGCCTACTACCGGACACCGGCGGGGTACTTACACGTGAGCGGGGGGCAGCAGAGAGCGGGAACGCTGGCTCTCCCTTCGACCTCCGGAGCTGGAGGTGGAGGAACAGCGCGGGATTTCGAGCAGGAAGACGTGAGTGGCGGTGGCGGGGGCGGAGGAGGAGGGTCATCATCACGGAAGAGGTTCAGGACGAAGTTCACGCAGGAGCAGAAGGAGAAGATGCTGGAACTTGCAGAGAGATTGGGATGGCGGATTCAGAAACACGACGAGGGTGCGGTTCAAGAGTTTTGTAACGAGACGGGTGTGAAGCGGCATGTTCTCAAGGTTTGGATGCATAACAACAAACACACCCTCGCTTCATGA 783 0.5862 MEFDEQEEQEEELCVPGGTGYDPLGNPTRVKMSGSEPMLVVQPMTVRNNNNNNSSSNMVKPRYRECLKNHAVGIGGHALDGCGEFMPAGTEGTLDALKCAACNCHRNFHRKETELAGAGPGGGGPYLLTHHPHHHQPPPFAAYYRTPAGYLHVSGGQQRAGTLALPSTSGAGGGGTARDFEQEDVSGGGGGGGGGSSSRKRFRTKFTQEQKEKMLELAERLGWRIQKHDEGAVQEFCNETGVKRHVLKVWMHNNKHTLAS* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0003 260 MobiDBLite consensus disorder prediction 161 202 - -
Amo05g0003 260 SUPERFAMILY Homeodomain-like 186 257 IPR009057 -
Amo05g0003 260 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 44 258 - -
Amo05g0003 260 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 199 255 IPR006455 -
Amo05g0003 260 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 112 IPR006456 -
Amo05g0003 260 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 44 258 - -
Amo05g0003 260 MobiDBLite consensus disorder prediction 1 27 - -
Amo05g0003 260 Pfam ZF-HD protein dimerisation region 62 113 IPR006456 -
Amo05g0003 260 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 62 112 IPR006456 -
Amo05g0003 260 Gene3D - 186 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0003 Amo-Chr5 41520 43014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0003 1 258 ZF-HD Transcription Factor Family AT4G24660 48.450 4.87e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Amo05g0003 ZF-HD_dimer 6.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0003 - - aip:107639896 416.001