Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g3023 ATGGAGTCTCATGACGAGACAGGATGCCAGGCTGCTGAACGTCCCATACTTTGCATTAATAATTGTGGCTTCTTTGGAAGGGCTGCCACCATGAACATGTGTTCCAAATGCTACAAGGACATGCTGTTGAAGCAGGAACAGGACAAGCTCGCAGCAGCATCGGTTGAAAACATCGTGAATGGTGCTTCCAGCAGCACTGGCAAACATGCTGTGAGTGCAGGTGGGTTGGACATACAAGTTGAAAATGTGGAYGCCAAGARAGTCTCTGCTGAGATTTCTGTGGATTCAACCTCTGTTGAGAATTTGGAGACGAAAGCCAAGGCAGGCCCCAGCAGATGCGCGACTTGCCAAAAGCGTGTTGGATTAACTGGTTTCAGCTGCAAATGTGGAAACCTCTTTTGTTCAATGCATCGCTATTCTGACAAACATGACTGCCCCTTTGATTATCAGAGTGTTGGCCGGGATGCTATTGCTAAAGCGAACCCTGTGGTCAAGGGTGATAAGCTTGATAAAATCTAG 519 0.474 MESHDETGCQAAERPILCINNCGFFGRAATMNMCSKCYKDMLLKQEQDKLAAASVENIVNGASSSTGKHAVSAGGLDIQVENVDAKXVSAEISVDSTSVENLETKAKAGPSRCATCQKRVGLTGFSCKCGNLFCSMHRYSDKHDCPFDYQSVGRDAIAKANPVVKGDKLDKI* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g3023 172 Gene3D - 87 168 IPR035896 -
Amo04g3023 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 54 - -
Amo04g3023 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Amo04g3023 172 Pfam AN1-like Zinc finger 113 150 IPR000058 GO:0008270
Amo04g3023 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Amo04g3023 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 2 172 - -
Amo04g3023 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Amo04g3023 172 Gene3D - 1 68 - -
Amo04g3023 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Amo04g3023 172 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8 2 172 - -
Amo04g3023 172 SUPERFAMILY AN1-like Zinc finger 99 167 IPR035896 -
Amo04g3023 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g3023 Amo-Chr4 106106883 106109005 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g3023 5 172 C2H2 Transcription Factor Family AT3G52800 42.604 3.00e-40 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g3023 - - gmx:100499995 293.893