Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g3004 ATGGGCGTTGGTGGCAATTTCTGGGAGCTACTAAAGCCCTATGCACGGAGCGAAGGGTTTGATTTCTTGAGGAACAAGCGAGTGGCTGTGGACCTCTCTTACTGGATTGTGGCCCACGAGACTGCCTTAAAGTCTCATCATGTTCGCAAACCCCACCTCAGACTCACCTTCTTCCGCACCATCAATCTCTTCTCCAAGTTTGGAGCATTTCCAGTGTTTGTTGTTGATGGAACTCCATCGCCGTTGAAATCAGAGGCACGGATTGCAAGATTTTTCCGGTCTTCTGGCATTGAATTAACTAGCTTGCCGGTGCCTGAAGGAGGTGTCTCAGCTGAAAGGAACAGTGCTTTTACAAAATGTGTTCAAGAATGTGTGGAACTTGTTGAACTACTTGGAATGCCTGTATTAAAGGCTAAAGGAGAGGCCGAAGCACTTTGCGCCCAATTAAATTGTGAAGGTCATGTAGATGCTTGCATCACAGTTGACAGTGATGCATTTCTCTTTGGGGCCAAATGTATAGTAAAATGTTTTCGCCCCAATTCCAAAGAACCCTTTGAGAGCTACAATATGTCAGATATTGAAGCTGGCCTTGGGTTGAAGAGGAAACACTTAATAGCACTTGCTCTTCTGGTTGGAAATGATCATGATATGAATGGTGTGCGAGGGATAGGACTTGATACTGCTCTTCAGTTTGTTCGAGCTTTTAGTGAAGATGATATATTAAATAGATTACATGAGATAGGCAAAGGAAACACTTCTCAAGTTCCCATAAGCATTAAATCTGGGGACTATATGGATACGGATGAGAACTCCCCGAATAAAAAACAAGCCCACTGCTCATTCTGTGGGCATCCTGGCAGCAAAAGGGATCACACGAAGTTTTCCTGTGAATATTGTCTCACTAATGACGAAGAAGGTTGCCTGAGAAAACCGGAGGGTTTCAAATGTGATTGCTTCTCCTGTGATATGAACAGGAAACATAAGGAGCAGAAAAGGCTAGAAATTTGGCACACAAAAGTTTGCGACAAGATTGCAAAGGAACCAGATTTTCCAAAGGATGAAATCATTGATATGTATTTACATAAAGACAATGGTTACTTCTCCGAAAAGGATGGCCCTTGCATGTGTTGGGAAAAACCTAATATTGAGATGCTGATTGATTTCTTAAACTTCCATCAGAACTGGGATCCATCCTACGTTCGGCGGCTGATCTTTCCTGTTATGTCCACCATCTTCTTGAGAGATATCACTACTACTACAGCAGAAGATTTGTTATTTGGACAGTACGAGTTTGATTCCTTGGAACGTGTAAAGACGAGATATGGACATCAGTTTTATGTGGTCAAGTGGAAACGAGCATTCAACAACGTTGCCTATAGAATTCCATCGAATGTACCTGACACGCCACAACAAGGTACTAGAGAGCTGGATGAAACAGAGGATTTACTAGATGATTGTGATGTTCCCGAGGTTCTCATGGATGAGGGATCTAGTTTTCTATTGACAGATGAAAATATGGACCTTGTCGCAGCTGCCTTTCCAAAAGAAGTAAAAAGGTTTTGGCACGAACAGGAACTGAAGGAGTTGAAAAGAAGAAAGAGCCCATCCTCAAGATCAGATAAAAATGAAAATTCAGCATCACCAAGCTCAAAGAGGTTGCAGCTAAACATCACAGAATTCTTCCCTTCAACAAAAGTTAAAGATCAATCGAAAGCAGACGATTCATCCAAGGAAATCAGTGATAGCCAAGATAGTGGAGCCTCCAAAGGAAAGAGGAAAGAATCAAGTTCTAACCTCTCGAAATCCGTGAGGCGCCGCCTTCTATTTGACTAG 1833 0.4255 MGVGGNFWELLKPYARSEGFDFLRNKRVAVDLSYWIVAHETALKSHHVRKPHLRLTFFRTINLFSKFGAFPVFVVDGTPSPLKSEARIARFFRSSGIELTSLPVPEGGVSAERNSAFTKCVQECVELVELLGMPVLKAKGEAEALCAQLNCEGHVDACITVDSDAFLFGAKCIVKCFRPNSKEPFESYNMSDIEAGLGLKRKHLIALALLVGNDHDMNGVRGIGLDTALQFVRAFSEDDILNRLHEIGKGNTSQVPISIKSGDYMDTDENSPNKKQAHCSFCGHPGSKRDHTKFSCEYCLTNDEEGCLRKPEGFKCDCFSCDMNRKHKEQKRLEIWHTKVCDKIAKEPDFPKDEIIDMYLHKDNGYFSEKDGPCMCWEKPNIEMLIDFLNFHQNWDPSYVRRLIFPVMSTIFLRDITTTTAEDLLFGQYEFDSLERVKTRYGHQFYVVKWKRAFNNVAYRIPSNVPDTPQQGTRELDETEDLLDDCDVPEVLMDEGSSFLLTDENMDLVAAAFPKEVKRFWHEQELKELKRRKSPSSRSDKNENSASPSSKRLQLNITEFFPSTKVKDQSKADDSSKEISDSQDSGASKGKRKESSSNLSKSVRRRLLFD* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g3004 610 SMART xpgineu 129 199 IPR006086 GO:0004518
Amo04g3004 610 CDD PIN_GEN1 2 203 - -
Amo04g3004 610 PANTHER FLAP ENDONUCLEASE GEN-LIKE 1 1 598 - -
Amo04g3004 610 MobiDBLite consensus disorder prediction 540 565 - -
Amo04g3004 610 SUPERFAMILY PIN domain-like 6 214 IPR029060 -
Amo04g3004 610 MobiDBLite consensus disorder prediction 528 610 - -
Amo04g3004 610 MobiDBLite consensus disorder prediction 566 600 - -
Amo04g3004 610 Pfam XPG N-terminal domain 1 90 IPR006085 GO:0004518
Amo04g3004 610 SMART xpgn3 1 97 IPR006085 GO:0004518
Amo04g3004 610 Pfam XPG I-region 132 214 IPR006086 GO:0004518
Amo04g3004 610 Gene3D - 3 198 - -
Amo04g3004 610 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 199 414 IPR036279 -
Amo04g3004 610 Gene3D - 199 261 - -
Amo04g3004 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 149 169 IPR006084 -
Amo04g3004 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Amo04g3004 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 204 219 IPR006084 -
Amo04g3004 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 128 145 IPR006084 -
Amo04g3004 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Amo04g3004 610 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 598 IPR006084 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g3004 1 246 Core DNA Replication Machinery Family AT5G26680 29.368 9.67e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g3004 K15338 - gmx:100791251 911.753