Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g3000 ATGATGGGTTCAGGTACCAATTTGGTTACCACGGTCATTGGGTTTGGGATGAGTGCCACTTTCATTGTGTTTGTGTGCACAAGAATCATTTGTGGGAGGATAAGAGGGAGTGTTGAATCTCGCATGATGTATGAGATTGAATCCAGGATTGACGTAGAACAGCCAGAACATCATGCTAATGACCCTGAACCTGAGCCTGTTATGCTTGATGCAATCCCCACTTTGAAGTTCAACCAAGAGGCCTTCAGTGCCATTGAAGATACACAGTGTGTCATATGTTTGGCAGATTACAGAGAAAGAGAAGTGTTACGCATCATGCCGAAATGCGGTCACACATTTCATCTTTCTTGCATTGACATATGGCTGAGGAAACAATCCACTTGCCCGGTATGCCGTCTGCCATTGAAAAACTCGTCCGAGGCGAAACATGTTAGACCTGTTACATTTACCATGAGCCAGCCTCTTGATGAGTCGCACACACCAGAAAGGAATCAAGATAGTGAGAGTCGTGTCGAACCGGCCGCTAGCAACTCCTCACAACCACCACCTCCTGGAGAACCAGAAGCAAGGCAATGA 576 0.4653 MMGSGTNLVTTVIGFGMSATFIVFVCTRIICGRIRGSVESRMMYEIESRIDVEQPEHHANDPEPEPVMLDAIPTLKFNQEAFSAIEDTQCVICLADYREREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSEAKHVRPVTFTMSQPLDESHTPERNQDSESRVEPAASNSSQPPPPGEPEARQ* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g3000 191 MobiDBLite consensus disorder prediction 177 191 - -
Amo04g3000 191 PANTHER OS11G0150450 PROTEIN 1 167 - -
Amo04g3000 191 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Amo04g3000 191 Pfam Ring finger domain 89 132 IPR001841 -
Amo04g3000 191 SUPERFAMILY RING/U-box 79 138 - -
Amo04g3000 191 SMART ring_2 90 131 IPR001841 -
Amo04g3000 191 MobiDBLite consensus disorder prediction 144 191 - -
Amo04g3000 191 PANTHER OS02G0676500 PROTEIN 1 167 - -
Amo04g3000 191 MobiDBLite consensus disorder prediction 144 158 - -
Amo04g3000 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 142 IPR013083 -
Amo04g3000 191 CDD RING-H2_EL5_like 89 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g3000 Amo-Chr4 105775817 105778335 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g3000 79 135 C3H Transcription Factor Family AT4G10160 56.140 9.90e-20 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g3000 - - ccaj:109802319 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo04g3000 04 105775817 105778335 Amo12g2989 12 117374088 117375920 PCT
Amo12g2989 12 117374088 117375920 Amo04g3000 04 105775817 105778335 PCT