Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2986 ATGGCAGAAACTGAGGATAAGAAACATGCTCCTCCTCCACCACCACCAACAGCAACAACCACGGAAGACGCCGCCGTCGTCGCGGCCACCACCACCAACAACATAGGTCAACAAGCAAACAATAAATCCAGCAACAACAACATGGTGAGAAGGTTCATAGGGGTGAGGCAAAGGCCCTCAGGGAGATGGGTGGCAGAGATTAAAGACTCATCTCAGCATGTGAGATTATGGCTTGGTACCTATGATTCACCTGAACAGGCTGCTAGGGCTTATGATGAAGCTGCTAGAGCACTTCGTGGTGACAATGCAAGAACCAACTTTGCACCACCCTCGTCTTCGTCATCACCGCCACTGCCTCCTCCATCTCCAGGAAATAATAACAATAATAAGCATGGATTAAGCTTTGCCTCATTGAAAGCAAAGTTGAGCAAGAACTTGCAAAGCATCATGGCAAGGGCTAATCACAACAACAAATCTTCATCATCAAAGAGTAGAGTGAGTGATCATTTCACCTTTGCTAGCATATTCAATCGCAATAGGAACAACAATCATCATCAACAACATGCTCCTCCTCCTCCTATGGTAATAGATGTTAAGAACATTGACAAAGTGGTGCAACCTAGCATCATAGTACCACCACACAAGGACCAACATCAACATTATTATGAGCCTAATAACAACAACAATTGGGAAACTTCAAGTGTCTCTGATTGTAGCAACGAGTGGATCATAAACAATAATGGGTTATTCCAAAAACATAGGTTGTTGTTGGATTCATCATCATCAGCAGGTTCTGATAATGATGGTGAGTTTGGTTGTGTTGGTGATCAAGGGGTTTTGGATCAACTAATGGGGTGGGTTGATAGCACTCAGATTAGTAGTAGTGATGAGGGTTTATCATCATCAAGGAGCAAAAGATTCAAGGTATCTTCTTCAGTTCTTGTGCCACCAACTTTCACTGCTTCTTCTTCTCCTTCTCCTTATTATTATTATGATTGCGCTTCTCCATACACTAGTGCTTCTGGATCTCCATATAATGGTAATGGTAGTTATTATGGTTATGGTTATGGCTCCCCTAATTACTATGGCTCTCACTATAATAATAGTACTGATGGTAAATAA 1122 0.4234 MAETEDKKHAPPPPPPTATTTEDAAVVAATTTNNIGQQANNKSSNNNMVRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDSPEQAARAYDEAARALRGDNARTNFAPPSSSSSPPLPPPSPGNNNNNKHGLSFASLKAKLSKNLQSIMARANHNNKSSSSKSRVSDHFTFASIFNRNRNNNHHQQHAPPPPMVIDVKNIDKVVQPSIIVPPHKDQHQHYYEPNNNNNWETSSVSDCSNEWIINNNGLFQKHRLLLDSSSSAGSDNDGEFGCVGDQGVLDQLMGWVDSTQISSSDEGLSSSRSKRFKVSSSVLVPPTFTASSSPSPYYYYDCASPYTSASGSPYNGNGSYYGYGYGSPNYYGSHYNNSTDGK* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2986 373 Gene3D AP2/ERF domain 50 109 IPR036955 GO:0003700|GO:0006355
Amo04g2986 373 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
Amo04g2986 373 MobiDBLite consensus disorder prediction 103 132 - -
Amo04g2986 373 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Amo04g2986 373 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Amo04g2986 373 MobiDBLite consensus disorder prediction 1 21 - -
Amo04g2986 373 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 25 299 - -
Amo04g2986 373 CDD AP2 51 108 IPR001471 GO:0003700|GO:0006355
Amo04g2986 373 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 25 299 - -
Amo04g2986 373 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677
Amo04g2986 373 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Amo04g2986 373 Pfam AP2 domain 51 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2986 Amo-Chr4 105554343 105556262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2986 37 108 AP2-EREBP Transcription Factor Family AT5G19790 62.500 1.16e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo04g2986 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2986 K09286 - gmx:100799444 260.381