Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2985 ATGGTGGAAGGTGGTGGAGGTGAGGTTTCGGTTTCGGATTCGGTTGATGAACTTTCAACAGAAGAATGGTTGTTGAATGCAGAGAAGCTTGTTCCTGAGGCAATTGATAAAGCTAAAGAGGTTAAAGTGTTCCTGGGAAGATGGAAGATGATTGTTTCGAAACTCGAACAGATCCCTTCGCGGCTGTCGGATTTGTCGAGCCACCCGTGTTTCGGGAAGAATGCGCTTTGCAAGGAGCAGTTACAGGCAGTTACAAGGACTCTGAAGGAATCAATTGAATTGGCTGAGATTTGTTTGAAGGACAAGTTTGAAGGTAAGTTGAAGATGCAAAGTGACCTTGATTCATTAGCCGCCAAATTGGATTTGAATTTGAGGGATTGTGGCCTCCTCGTCAAGACTGGTGTCCTTGGCGAGGTGGCCCGGCCAGAGGCGGATGCTGCCACGCATGGCAGCATCAAAGAATTGCTTGCTCGCCTCCAGATCGGGCATCTGGAGGCAAAGCATAGAGCATTGGATAGTCTTGTGGAAGCAATGAGGGAAGATGAGAAGAAAGTTTTGGCGGTTATGGGGAGAAGCAACATTGCTGCTTTGGTTCAGTTACTAACCGCCACTTCTCACAGGATAAGAGAGACGGCGGTTACAGTTATATGCTCGCTCGCGGAATCCGGTAGCTGTGAGAATTGGTTAGTTTCCGAAGGCGTTCTGCCGCCTCTTATAAGGCTGGTTGAGTCCGGTAGTTTTGTGGGAAAAGAGAAAGCTGTAATTTCTCTTCAGAGGCTGTCAATGTCGGCGGAAACAGCCCGCGCAATCGTCGGACACGGCGGCGTTAGGCCGTTGGTTGAGCTTTGTCAGACCGGGGATTCGGTGTCGCAATCCGCGGCTGCTTGTACACTGAAGAATATTTCGGCCGTTCCGGAGGTTAGACAAGCTTTGGCCGAAGAAGGCGTCGTTAGAACAATAATCAATTTGCTTAACTGCGGAATTCTGTTGGGATCCAAAGAGTACGCGGCGGAGTGCTTGCAGAATCTAACTGCAAGCAACGAGAATCTTCGTAGGAATATAATAACAGAAGGTGGCGTTATGAGTCTTCTAGCGTATCTTGATGGTCCTTTGCCTCAAGAATCCGCCGTTGGCGCGTTGAGGAACTTGGTAGGATCTGTCCCAGAGGACACACTCGTTTCGCTCGGCTTCCTTCCAAGATTGTCTCACGTGCTGAAATCCGGTTCCCCGGGAGCTCAGCAGGCGGCCGCAGCCGCAATCTGCCGAGTTTCCAGCACACCGGAGATGAAAAAGCTAGTGGGCGAAGCCGGATGCATACCTCATCTGGTAAAGATGCTGGAGGCGAAATCAAGCAGCGGTAGGGAGGTGGCGGCGCAGGCGATGGCGAGCCTAATTAGCGTGTCGCGGAATCAGAGAGAAGTGAAGAAGGATGATAAGAGTGTTCCAAACTTGGTTCAGTTGCTTGATCCAAGTCCGCAGAACAGTGCAAAGAAATATGCAGTTTCATGCTTGGGATCGCTTTCTTCATGCAAGAAATGCAGGAAGCTTATGATCTCTTATGGCGCAATTGGGTATCTGAAGAAACTCACTGAGATGGATATTCCAGGTGCTAAGAAACTTCTTGAGAGATTGGAGAAAGGCAATTTTAGAAGCTTGTTTAGCAAGAAATAG 1671 0.4925 MVEGGGGEVSVSDSVDELSTEEWLLNAEKLVPEAIDKAKEVKVFLGRWKMIVSKLEQIPSRLSDLSSHPCFGKNALCKEQLQAVTRTLKESIELAEICLKDKFEGKLKMQSDLDSLAAKLDLNLRDCGLLVKTGVLGEVARPEADAATHGSIKELLARLQIGHLEAKHRALDSLVEAMREDEKKVLAVMGRSNIAALVQLLTATSHRIRETAVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSFVGKEKAVISLQRLSMSAETARAIVGHGGVRPLVELCQTGDSVSQSAAACTLKNISAVPEVRQALAEEGVVRTIINLLNCGILLGSKEYAAECLQNLTASNENLRRNIITEGGVMSLLAYLDGPLPQESAVGALRNLVGSVPEDTLVSLGFLPRLSHVLKSGSPGAQQAAAAAICRVSSTPEMKKLVGEAGCIPHLVKMLEAKSSSGREVAAQAMASLISVSRNQREVKKDDKSVPNLVQLLDPSPQNSAKKYAVSCLGSLSSCKKCRKLMISYGAIGYLKKLTEMDIPGAKKLLERLEKGNFRSLFSKK* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2985 556 Pfam Armadillo/beta-catenin-like repeat 267 303 IPR000225 GO:0005515
Amo04g2985 556 Pfam Armadillo/beta-catenin-like repeat 426 464 IPR000225 GO:0005515
Amo04g2985 556 Gene3D - 143 368 IPR011989 -
Amo04g2985 556 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 12 556 - -
Amo04g2985 556 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 12 556 - -
Amo04g2985 556 SMART arm_5 468 509 IPR000225 GO:0005515
Amo04g2985 556 SMART arm_5 386 425 IPR000225 GO:0005515
Amo04g2985 556 SMART arm_5 346 385 IPR000225 GO:0005515
Amo04g2985 556 SMART arm_5 181 221 IPR000225 GO:0005515
Amo04g2985 556 SMART arm_5 426 466 IPR000225 GO:0005515
Amo04g2985 556 SMART arm_5 304 345 IPR000225 GO:0005515
Amo04g2985 556 SMART arm_5 263 303 IPR000225 GO:0005515
Amo04g2985 556 Gene3D - 369 547 IPR011989 -
Amo04g2985 556 SUPERFAMILY ARM repeat 149 533 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2985 Amo-Chr4 105540864 105544883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2985 333 526 U-box Gene Family AT3G54790 30.303 3.57e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2985 - - gmx:100789140 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3396 14 136505548 136509130 Amo04g2985 04 105540864 105544883 hybridization
Amo04g2985 04 105540864 105544883 Amo12g2986 12 117327923 117331866 PCT
Amo12g2986 12 117327923 117331866 Amo04g2985 04 105540864 105544883 PCT