Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2973 ATGAGTTTTGGGGGGTTCCTTGAGAACAAACAAGGTGGTGGTGGTGCCAGAATGGTGGCTGAAATACCTTACAGCAACGGTTCTTCAAACCACCACCACCACCACCACCACATGGAAGCAGCAACAGCAGCGACAATAATGGCTTCTGGTGCAATCTCACATCCTCATTTGGCCAAATCCATGTTCAACAACTCACCTGCTCTCTCTCTAGCACTTCAGCAAACAAATATGGATGGGCAAGGGGATGTGATGAACAATAATAACAGGCTGTTGGTGGGTGATAATAATAATAATAACAATCCTAATACTAATAATAATAATAATTATGAGGGAAACATGATGAGCAACAACAATGGTTTGAGAAGGAGCAGGGAAGAAGAGCATGAAAGCAGATCTGGGAGTGATAACATGGACGGTGCCTCAGGTGATGATGATCTTGATGCTGCCGACATCAACAACAACAAACCCAGGAAGAAGCGTTACCACCGACACACCCCTCAGCAAATTCAAGAACTTGAAGCGCTGTTCAAGGAGTGTCCTCACCCTGATGAGAAGCAAAGGCTTGAACTAAGCAAAAGGCTATGCTTGGAAACAAGGCAAGTGAAGTTTTGGTTCCAAAATAGAAGAACTCAAATGAAGACACAATTGGAACGCCATGAGAACACATTACTCCGGCAAGAGAACGATAAGCTTAGAGCAGAAAACATGTCATTGAGGGAAGCAATGAGGAACCCCATTTGCACAAACTGTGGAGGACCAACCATGATTGGTGAAATCTCATTGGAAGAACAGCATCTACGAATCGAAAATGCGAGGTTAAAGGACGAGTTAGACCGGGTGTGCGCACTCGCCGGAAAGTTCTTAGGCCGGCCCATTCCCTCAATTGCCCCTCATCCTCCATTGCCAAACTCAAGCTTAGAGCTTGGAGTTGGAAACAACAATAACAGCAACAATGGAAGCTTTGTTGTGGGTTCAACAATGCCATTAGGGCCTGATTTTGTTGGAATGGGCATTTCATCAAACACCTTAGGGGTGTTATCACCAACACCACCAAGCAGGGGAATTGCGACAACAAATGGGATGAATTCTTCAAATACATCATCTGGGTATGAGAGATCAATGGTTTTGGAGCTTGCATTGGGTGCAATGGATGAGTTGGTGAAGATGGCACAAAGTGGAGAACCACTTTGGATAAGGGGAATGGAAATGGGAGGAAGGGAAGTGTTGAACCATGAAGAGTACAGTAGAACAGTGACACCTTGCATTGGTTTGAGACCCAATGGGTTTGTCTCTGAGGCTTCTAGGGAAACTGCCATTGTCATCATCAATAGCTTGCCTCTTGTTGACACTTTAATGGACTCAAATCGATGGTCAGAAATGTTCCCTTGTATGGTTGCAAGAACTTCTACAACAGAAGTGATATCTAGTGGAATAAATGGAACTAGAAACGGTGCACTTCAACTTATGCAAGCTGAACTGCAAGTGCTTTCACCATTGGTTCCTGTTAGAGAGGTCAATTTTCTAAGATTTTGCAAACAACATGCAGAAGGGGTTTGGGCTGTGGTTGATGTGTCCATAGACACCATTAGAGAACCTTCTTCTGCTGCACCAACTTTTGTTAGCTGTAGAAGACTCCCTTCTGGTTGTGTTATACAAGACATGCCTAATGGTTACTCTAAGGTGACATGGGTGGAGCATGCAGAATATGATGAAAGCCAAATCCACGAGCTGTATAGGCCATTGGTGAGTTCAGGAATGGGGTTTGGTGCACAACGTTGGATTGCAACTCTTCAACGCCAATGCGAGTGCCTAGCCATCTTAATGTCCTCTGCTGTTTCCCCTCCTGAACACTCTGCAATAACATCGAGTGGAAGGCGTAGCATGCTGAAGCTGGCGCAACGCATGACCAACAACTTCTGCGCCGGTGTTTGTGCCTCAACGGTGCACAAATGGAACAAGCTCAATGCCGGCAACTTCGGCGAAGACGTGAGGGTGATGACAAGGAAGAGCCTTGATGATCCCGGGGAGCCTCCTGGGATCGTCCTGAGCGCAGCCACATCCGTGTGGCTGCCAGTCTCGCCCCAGAGGCTCTTTGATTTCCTCCGCGACGAGAGGCTGAGGAGCGAGTGGGACATACTTTCCAATGGCGGACCCATGCAGGAGATGGCTCACATTGCCAAGGGACAAGACCATGGCAACTGTGTTTCACTACTACGAGCCAGTGCTATGAATTCAAATCAGAGTAGCATGTTGATATTGCAAGAGACATGCACAGACGCGTCTGGGTCGCTTGTAGTGTACGCGCCAGTGGACATTCCAGCCATGCATTTGGTCATGAATGGCGGTGACTCGGCTTACGTGGCGCTTCTGCCATCTGGATTCGCCGTTGCACCTGACGGATCTGGTGGCAGAAATGACCACAATACCGTGTCACAACCCGGAGGTGGGTCACTTCTCACGGTGGCGTTTCAGATACTCGTGAACAGCCTCCCTACGGCGAAACTCACGGTGGAGTCGGTGGAGACGGTGAACAACCTCATCTCATGTACGGTTCAGAAGATAAAAGCGGCACTTCAATCCGAGGGTTGA 2589 0.4762 MSFGGFLENKQGGGGARMVAEIPYSNGSSNHHHHHHHMEAATAATIMASGAISHPHLAKSMFNNSPALSLALQQTNMDGQGDVMNNNNRLLVGDNNNNNNPNTNNNNNYEGNMMSNNNGLRRSREEEHESRSGSDNMDGASGDDDLDAADINNNKPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSLREAMRNPICTNCGGPTMIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPIPSIAPHPPLPNSSLELGVGNNNNSNNGSFVVGSTMPLGPDFVGMGISSNTLGVLSPTPPSRGIATTNGMNSSNTSSGYERSMVLELALGAMDELVKMAQSGEPLWIRGMEMGGREVLNHEEYSRTVTPCIGLRPNGFVSEASRETAIVIINSLPLVDTLMDSNRWSEMFPCMVARTSTTEVISSGINGTRNGALQLMQAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIREPSSAAPTFVSCRRLPSGCVIQDMPNGYSKVTWVEHAEYDESQIHELYRPLVSSGMGFGAQRWIATLQRQCECLAILMSSAVSPPEHSAITSSGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNFGEDVRVMTRKSLDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNSNQSSMLILQETCTDASGSLVVYAPVDIPAMHLVMNGGDSAYVALLPSGFAVAPDGSGGRNDHNTVSQPGGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQSEG* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2973 862 Pfam START domain 378 603 IPR002913 GO:0008289
Amo04g2973 862 ProSitePatterns 'Homeobox' domain signature. 190 213 IPR017970 GO:0000981|GO:0006355
Amo04g2973 862 MobiDBLite consensus disorder prediction 120 134 - -
Amo04g2973 862 MobiDBLite consensus disorder prediction 78 165 - -
Amo04g2973 862 ProSiteProfiles START domain profile. 368 606 IPR002913 GO:0008289
Amo04g2973 862 SUPERFAMILY Homeodomain-like 141 215 IPR009057 -
Amo04g2973 862 SMART START_1 377 603 IPR002913 GO:0008289
Amo04g2973 862 ProSiteProfiles 'Homeobox' domain profile. 155 215 IPR001356 GO:0003677
Amo04g2973 862 SUPERFAMILY Bet v1-like 631 855 - -
Amo04g2973 862 SUPERFAMILY Bet v1-like 370 603 - -
Amo04g2973 862 Pfam Homeodomain 158 213 IPR001356 GO:0003677
Amo04g2973 862 Gene3D - 147 231 - -
Amo04g2973 862 Gene3D - 446 601 IPR023393 -
Amo04g2973 862 SMART HOX_1 156 219 IPR001356 GO:0003677
Amo04g2973 862 CDD homeodomain 157 215 IPR001356 GO:0003677
Amo04g2973 862 CDD START_ArGLABRA2_like 372 602 - -
Amo04g2973 862 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 110 859 - -
Amo04g2973 862 MobiDBLite consensus disorder prediction 78 119 - -
Amo04g2973 862 MobiDBLite consensus disorder prediction 1 39 - -
Amo04g2973 862 Coils Coil 209 244 - -
Amo04g2973 862 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 110 859 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2973 Amo-Chr4 105313535 105322576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2973 1 861 Homeobox Transcription Factor Family AT3G61150 61.741 0.0 1015
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo04g2973 START 4.6e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2973 K09338 - gmx:100783614 1214.13