Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2968 ATGAATAATATGATGAGAAAGTTGAAAAGCATTGCTGCTGGCAAGACTTCTCTTCTTCCAGATTCTGGAGGGGATGATTTTATGACAAAAGGAGATAACTTTGGTGACGATATTGAAAGCAATGCAAATGATAGTAATGATAGGGGGCATCACATAAAAGAAGCTAACGGAACATCTAATTCCAAAAATGTAGCTAAAGAATTGCACGAAATCAAAATTAGGGATGAGAAAAGCAAAACCAACAATGGAAAGGATATAGAAGCAACAATAGTGAATGGTAATGGAACAGAAACAGGTCAAATAATCACTACTGCTATTACTGGTCGCGATGGACTATCAAAACAGACAATCTCATACATGGCAGAACGTGTGGTTGGTACCGGTTCTTTTGGTGTTGTTTATCAGGCTAAGTGTGTTGAAACGGGTGAATTAGTTGCAATAAAGAAAGTGTTGCAAGACAAGAGATACAAGAACAGGGAACTGCAAGTGATGAGAATTCTTGACCATACAAATGTTCTTAAACTAAAGCATTGCTTCTATTCAATGGCAAATAAAGATGAATTGTACCTTAATCTTGTTTTGGAGTATGTTCCTGAAACTGTCTATAGAGTCTCAAAGCAATATGTCAGGGTGCACCAACATATGCCTGCAATTTATATTCAACTATATGCATACCAAATATGCCGTGGTTTAAATTATTTGCATCATGTGATCAATGTGTGTCACCGTGACATCAAGCCCCAAAATCTCTTGGTTAACCCCCAAACTCATCAGTTAAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGTGAACCAAACATATCATACATATGCTCAAGGTATTATAGAGCTCCAGAACTAATTTTTGGGGCAACAGAATACACAACCGCCATAGATGTTTGGTCAGCTGGTTGTGTTTTAGCTGAGCTTATGTTAGGACAGCCAATGTTTCCTGGAGAGAGTGGGGTGGATCAATTAGTAGAGATTATTAAGATTTTGGGAACACCAACCAAAGAAGAAATAAAGTGCATGAATCCAAATTACAACGAGTTTAAGTTTCCTCAAATAAAAGCTCATCCATGGCATAAGGTTTTTCCCAAAGCAATGCCTCCTCAAGCAATAGATCTAGTCTCAAGGATGCTTCAATATTCACCTAATCTACGTTGCACTGCTTTGGAAGCGTGTGCTCACCCATTCTTTGATGATCTCCGAAACCCTAACATAACCTTGCCAAATGGGCGACCATTACCACCTTTGTTTGATTTCACAGCTCAAGAACTAGCGGATGCACCTGATGAGTTGCGTCGACGTCTAATTCCAGAGCATGCAAGAAATTAA 1347 0.3883 MNNMMRKLKSIAAGKTSLLPDSGGDDFMTKGDNFGDDIESNANDSNDRGHHIKEANGTSNSKNVAKELHEIKIRDEKSKTNNGKDIEATIVNGNGTETGQIITTAITGRDGLSKQTISYMAERVVGTGSFGVVYQAKCVETGELVAIKKVLQDKRYKNRELQVMRILDHTNVLKLKHCFYSMANKDELYLNLVLEYVPETVYRVSKQYVRVHQHMPAIYIQLYAYQICRGLNYLHHVINVCHRDIKPQNLLVNPQTHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDVWSAGCVLAELMLGQPMFPGESGVDQLVEIIKILGTPTKEEIKCMNPNYNEFKFPQIKAHPWHKVFPKAMPPQAIDLVSRMLQYSPNLRCTALEACAHPFFDDLRNPNITLPNGRPLPPLFDFTAQELADAPDELRRRLIPEHARN* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2968 448 Gene3D Transferase(Phosphotransferase) domain 1 199 447 - -
Amo04g2968 448 Pfam Protein kinase domain 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2968 448 SMART serkin_6 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2968 448 PANTHER SHAGGY-LIKE KINASE 41 447 - -
Amo04g2968 448 SUPERFAMILY Protein kinase-like (PK-like) 118 431 IPR011009 -
Amo04g2968 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Amo04g2968 448 MobiDBLite consensus disorder prediction 16 64 - -
Amo04g2968 448 Gene3D Phosphorylase Kinase; domain 1 104 198 - -
Amo04g2968 448 MobiDBLite consensus disorder prediction 41 55 - -
Amo04g2968 448 ProSiteProfiles Protein kinase domain profile. 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2968 448 CDD STKc_GSK3 114 406 IPR039192 -
Amo04g2968 448 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 41 447 - -
Amo04g2968 448 ProSitePatterns Protein kinases ATP-binding region signature. 125 149 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2968 Amo-Chr4 105154745 105159710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2968 125 406 Core Cell Cycle Gene Families AT1G76540 35.739 5.99e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Amo04g2968 Pkinase 8.2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2968 K00924 - gmx:100784150 738.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3408 14 136822321 136827369 Amo04g2968 04 105154745 105159710 hybridization