Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2967 ATGCAAAATACAAACGCTTCGCCGTCCTCTCCGGCCGCCGTGGACACGGCGCCGTTCCTCCTCCGAAGCCGCCGCTTCCTCCGGCGCACACCACCTCCACTTCGTACGGCGGCTCGTCTCTTCCGTCAGGCCTCAGGGCGGAGAATGATGCTCCGGGAACCATCCGTTCGGGTCCGGGAGGCGGCGGCGGCGGAGCTTGAGGGGCGGCAGAGCGACTGGGCCTACTCGAAACCGGTGGTGGTGGTGGACGTGCTTTGGAACCTGGCGGTTGCTCTTGTTGGCGCGGCGGTGCTGTGCGTCAGCACGAAAGAGGAGCCATGTGTTCCCTTGAGGGTGTGGATCGTAGGGTACTTGTTGCAAGGTTTGATTCATTCGCTGTGTGTTGTTGTGGAGTTCAATAAAAGAAGGAGAGTGCGGAGGAGCCAAGACGGTTCTACTTCTTCTAATGGTGGTGCTGATAGGGAATGGAGTTTCAGCTCTGAGAGCGATGATTTGGATTATGATAATGTTGAGCGCTTTCTGCACACTGATGATAACAGCATCACGAAGCATGTTGAGTCAGCAAATACCATGCTTTCATTTATATGGTGGGTCATTGGGTTCTATTGGGTAACTGCCGGTGGCCAGAATTTGACGAGGGACTCACCTCAGCTTTATTGGATCTGCATTACATTCCTTGCTTTTGACGTTGTGATTGTGCTGCTTTGTGTTGCTGTTGCATGTCTGATTGGTATTGCTGTTTGCTGTTGCCTGCCATGCATACTTGCTATCTTGTATGTTGTAGCAGATCAGGAAGGGGCAACCAAGGAAGAAATTGAGCAGTTGCCAAAATACAAGTTCAGAGTGATAAAGGAATCTAAGAAAGAAGATGATATTCCAGAATCTTCCAAAGGAATAATGATGCAATGCGACAGCGAAGCAACTGCCGAACATGCTATTGCCTTAGAAGATGCAGAATGCTGCATCTGCCTTTCTGCCTATGATGATGGTGCTGAACTCAGAGAACTTCCATGCAACCACCATTTCCATTGCACGTGCATCGACAAATGGCTGCTTCTAAATGCCACCTGTCCTCTCTGCAAGTTAAACATTTTAAGGACTAGTAATCACCACCAAGAAGTTTGA 1125 0.5031 MQNTNASPSSPAAVDTAPFLLRSRRFLRRTPPPLRTAARLFRQASGRRMMLREPSVRVREAAAAELEGRQSDWAYSKPVVVVDVLWNLAVALVGAAVLCVSTKEEPCVPLRVWIVGYLLQGLIHSLCVVVEFNKRRRVRRSQDGSTSSNGGADREWSFSSESDDLDYDNVERFLHTDDNSITKHVESANTMLSFIWWVIGFYWVTAGGQNLTRDSPQLYWICITFLAFDVVIVLLCVAVACLIGIAVCCCLPCILAILYVVADQEGATKEEIEQLPKYKFRVIKESKKEDDIPESSKGIMMQCDSEATAEHAIALEDAECCICLSAYDDGAELRELPCNHHFHCTCIDKWLLLNATCPLCKLNILRTSNHHQEV* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2967 374 CDD RING-H2_RNF111_like 319 363 - -
Amo04g2967 374 Pfam Ring finger domain 319 361 IPR001841 -
Amo04g2967 374 SUPERFAMILY RING/U-box 309 366 - -
Amo04g2967 374 ProSiteProfiles Zinc finger RING-type profile. 320 361 IPR001841 -
Amo04g2967 374 PANTHER TARGET OF ERK KINASE MPK-1 4 374 - -
Amo04g2967 374 SMART ring_2 320 360 IPR001841 -
Amo04g2967 374 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 374 - -
Amo04g2967 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 366 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2967 Amo-Chr4 105134586 105138293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2967 6 371 C3H Transcription Factor Family AT1G68070 48.774 2.42e-117 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2967 - - gmx:100795425 542.347