Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2962 ATGAATGGGGGATCTTTGGGCGGCGGGAAGCTGCAGCGGGAATGTAATTTTGATTTGAATGTCGAGGTGTGTGAAGATGTCAAGGAAACCTGCATCAATGTTGCCAATGGAAATGGTATTTATGAGGCAAATGTCATATCGGGTAAGATGGGTCAGCTCCAAGGAGACATGACAAATCTTAATCAGAGATCTATGGAAGTTGATGATGTTCGTAGTGATTTGAATGAGGTTTTCAAAGATTCCACACCAGAGGATGTTCCTGTAATTGTAATATCTGGTCATGAACAGTTCAAAATTTTTCAGGCAAAGTTGCAATTACCCTCTTCTTCCGAAAATTTAAATTCAGATGATGTTCCTGTTCTTGAAGTCTTTTCTATTTATGCTTGTTTAAGGTCATTCAGTACTTTATTATTTTTGAGTCCATTTGAGTTGGAGGATCTTATAGCTGCTTTGAAGTCCAAAACCCCAAGTATATTATTTGATAGCATTCATGTTTCTATTTTGGAAACTCTGAAAAAACATTTGGAATACCTTTCCAACGAGGGTATTCAATTTGCATCTGATTGTCTGAGGAATCTTAATTGGAATTTTCTGGACATTGTCACATGA 609 0.3711 MNGGSLGGGKLQRECNFDLNVEVCEDVKETCINVANGNGIYEANVISGKMGQLQGDMTNLNQRSMEVDDVRSDLNEVFKDSTPEDVPVIVISGHEQFKIFQAKLQLPSSSENLNSDDVPVLEVFSIYACLRSFSTLLFLSPFELEDLIAALKSKTPSILFDSIHVSILETLKKHLEYLSNEGIQFASDCLRNLNWNFLDIVT* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2962 202 ProSiteProfiles DDT domain profile. 117 177 IPR018501 -
Amo04g2962 202 PANTHER PHD-FINGER AND DNA BINDING DOMAIN-CONTAINING PROTEIN 84 202 - -
Amo04g2962 202 PANTHER PHD FINGER FAMILY PROTEIN 84 202 - -
Amo04g2962 202 SMART testlast3 117 177 IPR018501 -
Amo04g2962 202 Pfam DDT domain 122 172 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2962 Amo-Chr4 105078219 105079287 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2962 81 202 PHD Transcription Factor Family AT5G12400 54.098 3.77e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Amo04g2962 DDT 4.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2962 - - adu:107485507 369.392