Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2940 CAGGTTCGGTTACCCTCAATGGACGGAAGGGTTGCCTTGGTTCCTTGGGCAGATATGTTGAATCATAGTTGTGATGTGGATACCTTTTTGGATTATGATAATTTATCAAAGGAAATTGTCTTTACTACAGATCGGCCGTATCAACCAGGTGAGCAGGTGTTCATTTCATACGGAAAAAAATCAAATGGGGAGCTTCTATTATCGTATGGGTTTGTTCCAAGGGAAGGCGCCAATCCTTGTGATTCAGTTGAGTTGTTAGTGTCACTCAAGAAATCTGATAAATCCTACAAGAAGAAATTAGAACTCTTGAAGAAGTATGGATTATCAGGTTTCTCATCAGAATATGCCATCAACCCAACACCATTTCCTTTGTTGGCTAAGCAAGGAGACAATTCGTCGACGCAGAAGCTTGATAGCAGAGGCGAGGAGATGAATGGTGGCAGCCGCGACGCCAAGCTCTAG 462 0.4307 QVRLPSMDGRVALVPWADMLNHSCDVDTFLDYDNLSKEIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPREGANPCDSVELLVSLKKSDKSYKKKLELLKKYGLSGFSSEYAINPTPFPLLAKQGDNSSTQKLDSRGEEMNGGSRDAKL* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2940 153 Pfam SET domain 14 58 IPR001214 GO:0005515
Amo04g2940 153 Gene3D set domain protein methyltransferase, domain 1 1 71 - -
Amo04g2940 153 ProSiteProfiles SET domain profile. 1 58 IPR001214 GO:0005515
Amo04g2940 153 SUPERFAMILY SET domain 9 74 IPR046341 -
Amo04g2940 153 Gene3D - 77 137 IPR036464 -
Amo04g2940 153 PANTHER SET DOMAIN-CONTAINING PROTEIN 4 6 112 - -
Amo04g2940 153 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 6 112 - -
Amo04g2940 153 MobiDBLite consensus disorder prediction 125 141 - -
Amo04g2940 153 MobiDBLite consensus disorder prediction 124 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2940 Amo-Chr4 104839166 104843382 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo04g2940 SET 5.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2940 - - adu:107485637 192.971