Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2936 TTTATTTTCCGCAAAACCCTAAATTGCACATATATAGAGGTTCCGAATTCGCCTCCCCTTCCCTCCTCTCGCAGCAGCACAGTAGCTATGGCCCCCAAAAGAGGTGTTAAAGCTCCGGTTCCAGCTGCCAAGAAGAAACCCGAGAAGGTTACGAATCCGCTGTTTGAGAAGCGGCCTAAGCAGTTTGGGATCGGTGGAGCCTTGCCGCCGAAGAGGGACCTGACGCGGTTCGTGAAGTGGCCGAAGACTGTTCAAATCCAAAGGAAGAAGAGAATCCTCAAGCAGAGGTTGAAGGTCCCTCCAGCTTTGAACCAGTTCACCAAAACCCTTGACAAGAACCTTGCAACAAGCCTGTTCAAGATACTACTCAAGTATAGGCCTGAGGATAAAGCAGAGAAGAAGGAGCGGCTTTTGAAAAGGGCTCAGGCTGAAACTGAGGGAAAAACTGTTGAGGCCAAGAAGCCAATTGTTGTGAAGTATGGCCTCAATCATGTTACCTACCTTATTGAGCAGAACAAAGCACAGCTGGTTGTGATTGCTCATGACGTGGACCCGATTGAATTGGTTGTTTGGCTTCCTGCATTGTGCAGGAAGATGGAAATTCCATACTGCATTGTGAAGGGCAAGGCTCGCTTGGGATCAATTGTCCATAAGAAAACTGCTTCTGTTTTGTGCTTGACAAGCGTTAAGAATGAAGACAAATTGGAGTTCAGCAGAGTCCTTGAGGCTATCAAGGCTAACTTCAATGACAAGTTTGACGAGTACAGGAAGAAGTGGGGTGGCGGTATCATGGGTTCCAAATCCCAAGCCAAAACCAAGGCAAAGGAAAGACTTCTTGCCAAAGAAGCTGCTCAGAGGATGTCTTAG 867 0.4764 FIFRKTLNCTYIEVPNSPPLPSSRSSTVAMAPKRGVKAPVPAAKKKPEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAEKKERLLKRAQAETEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTSVKNEDKLEFSRVLEAIKANFNDKFDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2936 288 ProSitePatterns Ribosomal protein L7Ae signature. 196 213 IPR004037 GO:0042254|GO:1990904
Amo04g2936 288 Gene3D - 80 263 IPR029064 -
Amo04g2936 288 PANTHER BNAA03G47020D PROTEIN 19 286 - -
Amo04g2936 288 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 145 235 IPR004038 -
Amo04g2936 288 PRINTS Ribosomal protein L7A/RS6 family signature 158 172 IPR018492 -
Amo04g2936 288 PRINTS Ribosomal protein L7A/RS6 family signature 177 190 IPR018492 -
Amo04g2936 288 PRINTS Ribosomal protein L7A/RS6 family signature 193 203 IPR018492 -
Amo04g2936 288 PRINTS Ribosomal protein L7A/RS6 family signature 203 217 IPR018492 -
Amo04g2936 288 SUPERFAMILY L30e-like 118 259 IPR029064 -
Amo04g2936 288 PRINTS Ribosomal protein L7A family signature 247 267 IPR001921 -
Amo04g2936 288 PRINTS Ribosomal protein L7A family signature 120 133 IPR001921 -
Amo04g2936 288 PRINTS Ribosomal protein L7A family signature 215 239 IPR001921 -
Amo04g2936 288 PRINTS Ribosomal protein L7A family signature 76 93 IPR001921 -
Amo04g2936 288 PRINTS Ribosomal protein L7A family signature 96 115 IPR001921 -
Amo04g2936 288 PRINTS Ribosomal protein L7A family signature 154 174 IPR001921 -
Amo04g2936 288 PRINTS Ribosomal protein L7A family signature 59 76 IPR001921 -
Amo04g2936 288 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 19 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2936 Amo-Chr4 104777970 104780232 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2936 30 288 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 85.328 3.21e-168 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2936 K02936 - gmx:100792324 462.611