Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2930 TCATTGAAGTCAATAACCATTACACTTGCAAGAAGCAGGGGCACATCAGTTTATCCATTAATTCAACAGAAAATCAATCAAGCTAAACTAAACGATTTTAGCAACAGATTTATCAATAAAACTAATCTCAGTTCAGCAACCATCATCTATTCCAGCACAAACAACAATAACTCAGCAGCATTTCCTTTCTCATTGAATTTAACAATCATTCAACAAGCAGGCAATGAGGGGAAAAAATCAGCAGAAACCAACATCAATAACCATTACACTTGCAAGCAGCAGGGGCATAGCAGTTTATCCATTAATTCAACAAAAAATCAATCAATGAAACCACTTACCGTTTCACTTAAGAGGCTTGTAACAACAGCTTTTTTATCAACTTCTTTCTCATTCTTCCTTTCAGGCTCACTCACACTCCTTCAAAGTATCATATATTCCCTCTATACTATCATCTTTCATATATATGAGGAAAGATACTTCTTAAAATTAATTATTTTTATAAAATTTAACCTTCTATGCACGATACCTTCCATTATTTATTTTTTTTTGTTGTTAACCTTCTGCCTTCTTTTTTATTTATTTGGCTTGAGATACTCCCAAGACGCCATACTAGTGATCTCTTCTATATTCAGTGAGAGCACATCACGGCATGGACGAGCTACATTCTCTGTTTTACTTTTTCAGGATTTGGCAGTCGTGGTCTTGCTGATACTCATTCCTCTTATTTCACCCAATTCTTCCAAAGGAGGGGTTGGTTTTCAAGCCATTGCTGAAGCTCTTGGATTGGCTGCTGTTAAGGCAGCAATTGCCATTACTGCCATAATTGCAGGTGGACGATTGCTCCTTCGACCAATATATAAGCAAGTTGCAGAAAATCAAAATGCAGAAATATTCTCTGCCAACACACTCCTTGTTATTCTTGGGACCAGTCTTCTTACAGCCAGGGCAGGGCTTTCAATGGCATTGGGAGCATTTTTGGCTGGTTTACTGCTGGCAGAAACTGAATTTTCGTTACAGGTTGAATCTGATATTGCTCCATACCGTGGCCTTCTTTTGGGGTTATTCTTTATGACGGTTGGAATGTCAATTGATCCAAAACTTCTTGTTTCAAACTTCCCAGTTATCACCAGCACACTGGGACTGTTAATATGTGGCAAGACTATCTTGGTTTCTGTCATTGGTAAAATCTTTGGGATTTCTATCATTTCTGCCATAAGAACTGGTCTTCTTCTTGCTCCTGGTGGAGAATTTGCATTTGTGGCTTTTGGTGAAGCTGTTAATCAGGGCATAATGTCTTCTGAGATGTCTTCCTTGCTCTTTCTTGTCGTGGGCCTGTCAATGGCCATTACACCTTGGTTGGCTGCAGGAGGCCAGCTGATTGCTTCCCGTTTTGAGCAGCACGATGTTCGAAGTTTATTACCTGTGGAAAGTGAGACAGATGATCTGCAAGATCATATCATCATTTGTGGGTTTGGGCGAGTTGGTCAGATCATTGCCCAACTTCTTTCTGAGAGACTTATTCCTTTTGTTGCACTAGATGTGAGAAGTGATAGAGTGGCAGTTGGACGTGCCCTGGATCTGCCAGTATACTTTGGTGATGCTGGTAGTCGAGAGGTCCTCCATAAAGTTGGGGCTGAAAGAGCATGTGCTGCAGCAATAACTCTAGATACACCTGGTGCAAATTATAGAACCGTTTGGGCTCTGAGCAAGTACTTCCCAAATGTGAAGACTTTTGTTCGTGCTCATGATGTTGATCATGGATTGAATTTAGAGAAGGCTGGAGCTACTGCTGTTGTTCCAGAGACCTTAGAACCTAGTCTTCAACTAGCAGCTGCTGTCTTGGCTCAGGCCAAGCTTCCCACATCGGAGATTGCAGCAACCATAAATGAATTCAGATCCCGCCATCTGGCCGAGCTCACGGAGCTGTGCGAAGCAAGTGGAAGTTCTCTTGGTTATGGATTCAATAGAATTATGAGCAAACCCAAATCTCAATCACCGGATTCACTTGATGATGCTCAAGTGTCTGAAGGGACATTGGCCGTATGA 2046 0.412 SLKSITITLARSRGTSVYPLIQQKINQAKLNDFSNRFINKTNLSSATIIYSSTNNNNSAAFPFSLNLTIIQQAGNEGKKSAETNINNHYTCKQQGHSSLSINSTKNQSMKPLTVSLKRLVTTAFLSTSFSFFLSGSLTLLQSIIYSLYTIIFHIYEERYFLKLIIFIKFNLLCTIPSIIYFFLLLTFCLLFYLFGLRYSQDAILVISSIFSESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAAIAITAIIAGGRLLLRPIYKQVAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLVSNFPVITSTLGLLICGKTILVSVIGKIFGISIISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSEMSSLLFLVVGLSMAITPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPTSEIAATINEFRSRHLAELTELCEASGSSLGYGFNRIMSKPKSQSPDSLDDAQVSEGTLAV* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2930 681 Gene3D - 481 645 - -
Amo04g2930 681 Pfam Sodium/hydrogen exchanger family 188 453 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Amo04g2930 681 Gene3D - 159 461 IPR038770 -
Amo04g2930 681 ProSiteProfiles RCK N-terminal domain profile. 485 607 IPR003148 GO:0006813
Amo04g2930 681 PANTHER K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED 212 681 - -
Amo04g2930 681 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 482 623 IPR036291 -
Amo04g2930 681 MobiDBLite consensus disorder prediction 660 681 - -
Amo04g2930 681 Pfam TrkA-N domain 486 599 IPR003148 GO:0006813
Amo04g2930 681 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 212 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2930 Amo-Chr4 104663700 104676462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2930 212 681 Inorganic Solute Cotransporters AT4G00630 87.137 0.0 776
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2930 - - gmx:100818163 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3304 14 134398095 134408727 Amo04g2930 04 104663700 104676462 hybridization
Amo04g2930 04 104663700 104676462 Amo02g0190 02 2111058 2119257 PCT
Amo02g0190 02 2111058 2119257 Amo04g2930 04 104663700 104676462 PCT