Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2908 ATGTCATTCACAGGAACTTTGGACAAATGCAAGGCTTGTGACAAAACTGTTTATGTGGTTGATTTGTTAACTCTTGAAGGTATACCTTACCATAAAAACTGCTTCAGATGCACTCACTGCAAGGGTTATCTTACGATGAGYACCTATTCCTCAATGGATGGTGTCCTGTATTGCAAGACACACTTTGAACAGCTTTTCAAGGAATCTGGAAATTTTAGTAAGAACTTTCAAACAGCAAAGCCTTCTGAAAAATCAAATGATGGGAACAAGGCTCCAAGCAGACTCTCCTCCATGTTTAGTGGAACTCTTGACAAATGCTCAGTTTGTGGAAAAACAGTGTATCCACTGGAGAAGATGTCGCTGGAAGGAGAGTGCTATCACAAGACATGCTTTAGGTGTGCTCATGCAGGTTGTCCTCTGACACACTCCAACTATGCTGCCCTTGATGGTGTCCTGTATTGCAAGCACCATTTCCAGCAGCTYTTCATGGAGAAGGGTAACTACAACCATGTACTCCAGGCTGCTAAGGACAAAAAGGTCAATGCCACTCCACCTTCTGAACAAGCCGATGCTGAAGATGGCGAGAAGCCGGAGTCCGAGGAGAAGAAAGAGGAAGAAGAAGAAGCAGCTCATGAGGAAGAAGAATCTAAGGAAGAGGAAGAGGAAAAGAAAGATGAGGACACTTAG 687 0.4367 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKNCFRCTHCKGYLTMSTYSSMDGVLYCKTHFEQLFKESGNFSKNFQTAKPSEKSNDGNKAPSRLSSMFSGTLDKCSVCGKTVYPLEKMSLEGECYHKTCFRCAHAGCPLTHSNYAALDGVLYCKHHFQQLFMEKGNYNHVLQAAKDKKVNATPPSEQADAEDGEKPESEEKKEEEEEAAHEEEESKEEEEEKKDEDT* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2908 228 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Amo04g2908 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Amo04g2908 228 Pfam LIM domain 106 161 IPR001781 -
Amo04g2908 228 Pfam LIM domain 10 65 IPR001781 -
Amo04g2908 228 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Amo04g2908 228 MobiDBLite consensus disorder prediction 199 228 - -
Amo04g2908 228 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Amo04g2908 228 Gene3D Cysteine Rich Protein 5 72 - -
Amo04g2908 228 Gene3D Cysteine Rich Protein 102 170 - -
Amo04g2908 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Amo04g2908 228 SMART lim_4 9 61 IPR001781 -
Amo04g2908 228 SMART lim_4 105 157 IPR001781 -
Amo04g2908 228 PANTHER OS06G0237300 PROTEIN 1 206 IPR045268 GO:0051015
Amo04g2908 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Amo04g2908 228 MobiDBLite consensus disorder prediction 176 228 - -
Amo04g2908 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Amo04g2908 228 CDD LIM1_SF3 6 68 - -
Amo04g2908 228 Coils Coil 196 228 - -
Amo04g2908 228 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2908 Amo-Chr4 104284128 104286066 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Amo04g2908 LIM 3.4e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2908 - K09377 gmx:100779513 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo04g2908 04 104284128 104286066 Amo02g0189 02 2106287 2107503 PCT
Amo02g0189 02 2106287 2107503 Amo04g2908 04 104284128 104286066 PCT