Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2907 ATGACCGGTTCTGTTCTTGCAACCTTGGTTCCCAGTTCCAATTGCAATTCCAGACCATGGTGGTGGTGGGACTGGCCATCACTCTCTCAAAGGCCGTCACTGATTTCTCCTTGGCGCACTACTCCCTCCATCACCACCACCGCCACCGTCTTCTCCTCCTCTCAGCAACAAGACATCGGCATCATAACAAGCATTGATTCGTCCTCATCCTCAATAAGCCCGAGTTTCGAAAGACTGAAAACTCAGAAAGTCAAAGCTCTCGTCCACAGGTCTAAGCAGCACAGAAACAGAAGCACTGACGATGGTCGACCACGTGATTCATCGCCAAAGCCAAACCCTCGTTCAAGAGGAGGATGGGGGGATGCTGGAGGATCCTTCCGTTCTCTTCATTCTCAGGAGCTCGCTCCCGACACCAGCTTCTTCAGTGTCAAGTCCTTCAGGGAACTAGGCTGCGCTGACTACCTCATCCAATCACTCCAAAAGCTCTCTTTCCCGCGCCCTTCCAATGTACAGGCCATGGCATTTGCACCTGTTATTGCTGGAAAGACTTGTATTATAGCTGACCAAAGTGGTTCTGGAAAGACTTTAGCATATCTTGCACCAATAATTCAGCGTCTTMGGCAAGAAGAACTAGAAGGACACAGTAAATCCTCTCCTCAAGCTCCTAGAGTTGTCATACTAGCACCAACAGCTGAATTAGCTTCCCAGGTCTTAGATAATTGTCGATCACTGTCTAGATCTGGGGTTCCATTTAAATCTATGGTTGTCACAGGTGGCTTTCGACAAAGAACTCAACTGGAAACTTTACAACAGGGTGTTGATGTATTAATAGCTACACCTGGCCGTTTTTTGTTCCTTATGAAGGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGTTGTTTTGGATGAGGTAGATATTCTCTTTGGTGATGAGGATTTCGAAGTGGCTCTTCAAAGCTTGATCAATTCCTCACCCATAACTACACAATACTTATTTGTGACTGCAACTCTACCAAGAGATGTTTACAGCAAACTGGTTGAAATTTTCCCCGATTGTGAAATGATCATGGGACCTAGTATGCACCGAATAAGCCCACGCCTTGAAGAGATCATAGTAGATTGCAGTGGAGAAGACGGGCAAGAAAAAACTACTGATACAGCATTTCTGAACAAGAAATCTGCTCTTCTGCAGCTTGCAGAGGAACGCCCTGTTCCAAGAACTATTGTGTTTTGCAACAAAATTGAAACATGCAGAAAAGTTGAGAATGCATTAAAGCGTATAGATAGAAAGGGAGCAGTTATACAAGTTCTACCTTTCCATGCTGCCATGACACAAGAATCAAGGCTTGCAAGTATGAAGGAGTTTGCACGTTCACCGTCAAAACAAGTGTCCCAGTTTATGGTTTGCACGGACCGAGCATCAAGGGGAATAGACTTTTGGGGAGTGGAGCACGTGATACTGTTTGACTTCCCGAGGGATCCAAGCGAATATGTGAGGCGTGTCGGAAGAACGGCGAGAGGCGCCAAGGGTGTGGGGAAGGCATTCATATTCGTGGTAGGCAAGCAAGTATCGCTTGCACGCAAAATCATGGAAAGAAATAGGAAGGGTCACCCCTTACATGATGTCCCTTCTGCTGTTACCTTCTAG 1650 0.4612 MTGSVLATLVPSSNCNSRPWWWWDWPSLSQRPSLISPWRTTPSITTTATVFSSSQQQDIGIITSIDSSSSSISPSFERLKTQKVKALVHRSKQHRNRSTDDGRPRDSSPKPNPRSRGGWGDAGGSFRSLHSQELAPDTSFFSVKSFRELGCADYLIQSLQKLSFPRPSNVQAMAFAPVIAGKTCIIADQSGSGKTLAYLAPIIQRLRQEELEGHSKSSPQAPRVVILAPTAELASQVLDNCRSLSRSGVPFKSMVVTGGFRQRTQLETLQQGVDVLIATPGRFLFLMKEGFLQLTNLRCVVLDEVDILFGDEDFEVALQSLINSSPITTQYLFVTATLPRDVYSKLVEIFPDCEMIMGPSMHRISPRLEEIIVDCSGEDGQEKTTDTAFLNKKSALLQLAEERPVPRTIVFCNKIETCRKVENALKRIDRKGAVIQVLPFHAAMTQESRLASMKEFARSPSKQVSQFMVCTDRASRGIDFWGVEHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLARKIMERNRKGHPLHDVPSAVTF* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2907 549 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 144 172 IPR014014 GO:0003724
Amo04g2907 549 Pfam Helicase conserved C-terminal domain 392 508 IPR001650 -
Amo04g2907 549 CDD DEADc 155 342 - -
Amo04g2907 549 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 391 549 IPR001650 -
Amo04g2907 549 MobiDBLite consensus disorder prediction 93 110 - -
Amo04g2907 549 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 356 IPR014001 -
Amo04g2907 549 Gene3D - 365 541 IPR027417 -
Amo04g2907 549 CDD SF2_C_DEAD 368 519 - -
Amo04g2907 549 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 66 546 - -
Amo04g2907 549 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 66 546 - -
Amo04g2907 549 MobiDBLite consensus disorder prediction 87 128 - -
Amo04g2907 549 SMART helicmild6 419 509 IPR001650 -
Amo04g2907 549 Pfam DEAD/DEAH box helicase 169 342 IPR011545 GO:0003676|GO:0005524
Amo04g2907 549 Gene3D - 127 356 IPR027417 -
Amo04g2907 549 SMART ultradead3 163 371 IPR014001 -
Amo04g2907 549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 520 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2907 Amo-Chr4 104266013 104270378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2907 138 517 Eukaryotic Initiation Factors Gene Family AT3G13920 28.534 1.48e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2907 K13179 - gmx:100784377 723.005