Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2904 ATGGGAAGGAAGCCTTGCTGTGAGAAGAAGGGTTTGAAGAAAGGTCCATGGACTGCTGAAGAAGATGAAATCCTTTCTAACTATATCAAAAACAATGGTGGCCATGGTAGCTGGCGTTCTCTTCCTAAGATCACAGGACTCCTTCGTTGTGGTAAAAGTTGCAGACTTAGGTGGACAAATTATCTTAGACCTGACATTAAAAGGGGTCCCTTTACTTCTGAGGAAGAAAAACTTGTTATACAACTTCATGGCATCCTAGGAAACAGGTGGGCTGCTATTGCTTCTCAGTTACCAGGAAGAACAGATAATGAGATAAAGAATTTATGGAACACACACTTGAAGAAGCGACTCAAGAACATGGGAATCGATCCGAAAACACACGAGCCGGTTGCCTCGCCACATTACCCCCTCGACAAGGCACACTCTTCGTCGATTTCCACGCGCCATATGGCTCAGTGGGAGAGTGCAAGGCTTGAAGCAGAGGCAAGGCTCTCGACAGAATCATCAAAATTTAACAAGAATAATCCTTCTTCGCTCGGCGAAGGCAAAAGTACTAATGAATCCGATTACTTCCTCCGGATTTGGAACTCGGAAGTAGGCGAGGCGTTTCGCAGTGTTGGTAAATCGGAAAACAAAGGTGGATGCTGCCAGAGTGATAGTCCTATTTCAGCAGGATCATGTTCTAACAAATGTGAATCAATTTATAATGTGACTGCAGAATTGGCCTTAAACCAGTTAGGTACCTCAAACAATGGAATTGGAGGGAATCATGTGAAGGAAGAGTTAGTGTTATGTGCTGAAGAAGAAGGTATGGTTWTTCATGGTTCTGATTCTTCATGCTCTAATGAATTRGAAGATTCATCTGACACTGCATTGCAGCTRTTGTTAGATTTCCCCATAAACAATGACATGAGCTTCTTAGAGGGAAACTCTTTTGATTGCAACATTTAG 951 0.428 MGRKPCCEKKGLKKGPWTAEEDEILSNYIKNNGGHGSWRSLPKITGLLRCGKSCRLRWTNYLRPDIKRGPFTSEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLKNMGIDPKTHEPVASPHYPLDKAHSSSISTRHMAQWESARLEAEARLSTESSKFNKNNPSSLGEGKSTNESDYFLRIWNSEVGEAFRSVGKSENKGGCCQSDSPISAGSCSNKCESIYNVTAELALNQLGTSNNGIGGNHVKEELVLCAEEEGMVXHGSDSSCSNELEDSSDTALQLLLDFPINNDMSFLEGNSFDCNI* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2904 316 PANTHER PROTEIN ODORANT1-LIKE 1 310 - -
Amo04g2904 316 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Amo04g2904 316 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Amo04g2904 316 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 310 - -
Amo04g2904 316 MobiDBLite consensus disorder prediction 119 184 - -
Amo04g2904 316 CDD SANT 16 62 IPR001005 -
Amo04g2904 316 Gene3D - 11 68 - -
Amo04g2904 316 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Amo04g2904 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Amo04g2904 316 SMART sant 67 115 IPR001005 -
Amo04g2904 316 SMART sant 13 64 IPR001005 -
Amo04g2904 316 Gene3D - 70 134 - -
Amo04g2904 316 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Amo04g2904 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Amo04g2904 316 MobiDBLite consensus disorder prediction 167 184 - -
Amo04g2904 316 CDD SANT 70 113 IPR001005 -
Amo04g2904 316 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2904 Amo-Chr4 104256251 104259641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2904 1 310 MYB Transcription Factor Family AT3G61250 61.022 1.07e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo04g2904 Myb_DNA-binding 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2904 K09422 - gmx:100816569 437.187