LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo04g2903	ATGAACAACAATAGAGCGCGGTACCCACCTGGGATCGGATTAGGTCGTGGAAATGGTGGTTTCAACACTGGGTTTCAACCAAGGCCACCTCAACAACAGTATGTGCAAAGGCACATGGTTCAGCAGCAGCATCCTCAGCACTATCAGCACTATCAGCAGAATCAGCAACAACATCAACAGCAGCAGCAACAACAACAACAACAGCAACAACAGTGGTTGAGAAGGACCCAATTGGGTGGCGGTGGAAGTAATGACAATAACGTTGTTGAGGAGGTTGAGAAGACCGTACAGTCTGAAGCCGTGGACTCAAGTTCACAAGATTGGAAGGCAAGATTAAAGGTTCCACCRCCTGATACACGCTATAAGACTGAGGATGTAACGGCAACTAAAGGAAATGAATTCGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAGAGACCTTCACCAATCCAAGAAGAAAGYATTCCAATTGCTCTTACTGGCAGTGACATTCTTGCAAGGGCTAAGAATGGAACAGGCAAAACAGCTGCATTTTGTATTCCTGCATTGGAAAAAATTGATCAAGATAATAATGTTATTCAAGTTGTTATATTGGTCCCAACCAGAGAATTGGCCTTGCAGACTTCTCAAGTGTGTAAAGAACTCGGAAAACATTTGAAAATTCAGGTTATGGTAACMACTGGTGGTACCAGCCTAAAAGATGACATTATGCGSTTATATCAACCAGTTCATTTGCTGGTTGGAACTCCAGGAAGAATTTTGGATCTTGCAAAGAAGGGCGTTTGTGTTTTGAAAGATTGCTCTATGCTAGTTATGGATGAGGCTGATAAGCTTCTGTCCCCGGAGTTCCAACCTTCAATAGAGCAGCTGATTCAATTTCTTCCTCCAACCCGTCAAATCCTGATGTTTTCTGCAACATTTCCYGTTACTGTAAAGGACTTCAAAGATAGATATCTTCGAAAGCCATATATCATTAATCTTATGGATGAGCTAACTCTGAAGGGTATYACACAGTATTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGCCTAAATACTCTTTTCTCTAAGCTTCAAATAAACCAGTCAATCATCTTCTGTAATTCAGTGAATCGGGTTGAACTCCTTGCCAAGAAAATAACAGAACTTGGATATTCTTGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGTAACAGAGTATTTCACGATTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGATCTTTTTACTAGAGGTATAGACATCCAAGCAGTCAACGTTGTTATTAACTTTGATTTTCCGAAGAACTCAGAAACCTATCTGCACAGGGTTGGTCGTTCAGGAAGGTTTGGACACCTTGGTTTAGCAGTAAACTTGATTACATATGAGGATCGCTTCAATTTATATAGGATTGAACAAGAGCTTGGCACTGAAATAAAACAAATTCCACCACATATTGATCAGGCTATATATTGCCGGTGA	1521	0.4089	MNNNRARYPPGIGLGRGNGGFNTGFQPRPPQQQYVQRHMVQQQHPQHYQHYQQNQQQHQQQQQQQQQQQQQWLRRTQLGGGGSNDNNVVEEVEKTVQSEAVDSSSQDWKARLKVPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR*	507

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo04g2903	506	Gene3D	-	337	506	IPR027417	-
	Amo04g2903	506	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	343	503	IPR001650	-
	Amo04g2903	506	CDD	DEADc_DDX6	134	334	-	-
	Amo04g2903	506	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	279	287	IPR000629	-
	Amo04g2903	506	Gene3D	-	86	336	IPR027417	-
	Amo04g2903	506	Pfam	DEAD/DEAH box helicase	157	321	IPR011545	GO:0003676\|GO:0005524
	Amo04g2903	506	CDD	SF2_C_DEAD	344	473	-	-
	Amo04g2903	506	Coils	Coil	48	71	-	-
	Amo04g2903	506	Pfam	Helicase conserved C-terminal domain	358	464	IPR001650	-
	Amo04g2903	506	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 12	12	506	-	-
	Amo04g2903	506	MobiDBLite	consensus disorder prediction	24	105	-	-
	Amo04g2903	506	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	163	333	IPR014001	-
	Amo04g2903	506	MobiDBLite	consensus disorder prediction	1	123	-	-
	Amo04g2903	506	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	12	506	-	-
	Amo04g2903	506	SMART	helicmild6	383	464	IPR001650	-
	Amo04g2903	506	SMART	ultradead3	151	347	IPR014001	-
	Amo04g2903	506	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	132	160	IPR014014	GO:0003724
	Amo04g2903	506	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	202	486	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo04g2903	Amo-Chr4	104245138	104250967	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo04g2903	132	503	Eukaryotic Initiation Factors Gene Family	AT3G19760	38.235	5.47e-95	292

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo04g2903	K12614		-	tcc:18614173	849.736