Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2893 ATGAAAAATATTTGTCAATTGCACTTTGCTGATCTTGGCTTGGCATTCAAATTTTATAATTCATATGCCAAGACGAGGGGCTTCAGTGTGCGAAAGAGTAGAAGTAGAATAGTTGATGAAAAAGTTAGAGAAAAAACATATGTTTGTTCTTGTGAAGGGCATAGATTAGAAAAATGGAACCATATGAAAAATCGAGTTAGGGAGCCAAAACCAGAGACAAGATGTGGTTGTATGAGTAAACTTCATGTTATCTTCAATGTGGTAACTGAGAGTTGGGTAGTGAGAGATTTTTGTGATGAACACAACCATGAGCTTGTTGTTCCAAAATATATTAAATCACGCTATAATTTGACAGAATTTGTTCAACACTTCCAGCGTTGTTTGAGCTACATGCGGCACAGAGAGGATTTGGCAGACTTTAAATCATCAACTGGACAACCTGTGATGCAGACACACTTTCAACAACTAGAAAGGTCAGCAGCTACCATTTATACCCGGCAAATTTTTGTGTTGTTCCGTTCAATGCTCAACAAGGCCAGCACATTGAAGGTAATATATGAAGAGGAAACGAGTTCTTGCAAGATTTATCAGGTGTCAAAATTTTACAAGCCTAACATGATATGGCATGTGTCTTTTCATGGAGAGCAAGATGAATTTAAATGCTCATGCATGAGAATGGACTCCATAGGTATTCCATGTAGTCATATACTTGCTGTTTTGGGTTTTCTAGACATTGCAGAGCTGCCAAAATCATTAGTGCTGCGAAGATGGACTAGAAAAGCGAAGGAAGGCATTAGTGGGTATGATGACATGGGCGGCTTGATGGAGGATTCCTTGGCTATCAATCGGCGTGCATGTTTGGCACATTGGTGTAAACAAATTATGAACGAAGGGTGCCTAAAAGGGGATATTTTTAATGAATCACGAGATGCATTGGTAAATATACTTTCATGTATTAGGGCTCATAGCGGGGACAATAACATGATGGAGGAGCATGCAGAATACATGTATGAAGACCTTGCAAAGAATGGAAGTACTGAGATAGAGACCACAAGGAAGWCTAAGCGTTGCAGCTACTGTCGCAAGGGGGGGCATAACATTGCTACGTGTTCCATGAAGAAAATGGATGAAAGGACTCCCAAATTTGATGATGACGCTGAGGAGAATATTGAGGGTGAGGACTACTCCTTCGTAGATGCTGAAAGTGATGAGTATATTCACACTGAATGGTTTGAGGAGGAAGATGAATATTTAAATTTCTCAAGGTATTATGAACAGAGTGGTGACGAGACTGCGTCCTCAATCGATTACGATTCTGATGGGGCAAATGATGATGATGAGAAAGTCTTCGTGACATTTGATCCATTCATGTATTTATCATTTAGATAA 1389 0.3945 MKNICQLHFADLGLAFKFYNSYAKTRGFSVRKSRSRIVDEKVREKTYVCSCEGHRLEKWNHMKNRVREPKPETRCGCMSKLHVIFNVVTESWVVRDFCDEHNHELVVPKYIKSRYNLTEFVQHFQRCLSYMRHREDLADFKSSTGQPVMQTHFQQLERSAATIYTRQIFVLFRSMLNKASTLKVIYEEETSSCKIYQVSKFYKPNMIWHVSFHGEQDEFKCSCMRMDSIGIPCSHILAVLGFLDIAELPKSLVLRRWTRKAKEGISGYDDMGGLMEDSLAINRRACLAHWCKQIMNEGCLKGDIFNESRDALVNILSCIRAHSGDNNMMEEHAEYMYEDLAKNGSTEIETTRKXKRCSYCRKGGHNIATCSMKKMDERTPKFDDDAEENIEGEDYSFVDAESDEYIHTEWFEEEDEYLNFSRYYEQSGDETASSIDYDSDGANDDDEKVFVTFDPFMYLSFR* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2893 462 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 16 109 - -
Amo04g2893 462 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 110 383 IPR031052 GO:0006355
Amo04g2893 462 ProSiteProfiles Zinc finger SWIM-type profile. 208 244 IPR007527 GO:0008270
Amo04g2893 462 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 110 383 - -
Amo04g2893 462 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 16 109 IPR031052 GO:0006355
Amo04g2893 462 SMART 26again6 219 246 IPR006564 GO:0008270
Amo04g2893 462 Pfam FAR1 DNA-binding domain 17 106 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2893 Amo-Chr4 104092532 104095251 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo04g2893 FAR1 2.7e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2893 - - ahf:112719698 676.396