Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2874 ATGGATCATGGGGACCAAATGGCATCTTACTATATGCAGCAGAGAGGAATACCTGGTTCTGGAGCACAGCCAGAGTTTTCGGCCGGAATCCGGTCGCTGTCTAGCCCCAACCTACCATTTCAATCCGGCATTGGCAGTGGTGGATCAATTGGATCCACTATACAGCTAGAATCTTCAGGGATTTCGACCCACGGTGTCAATGTTGGTGCTCCTCCGGGGGTACCGCCTGGGGAACCTGTCAAAAGGAAGAGAGGAAGGCCAAGGAAATATGGGACTGATGGAACTGTGTTGGCTCTTACACCAACTTCGTCGAGTCATCCCGGAGCCATGACAACACCAGGCCAGAAACGGGGCCGAGGACGGCCCCCTGGGACTGGGAAGAAACAGCAATTGGCATCACTTGGTGAGATGATTTCTGGTTCGGCCGGGATGGGATTCACTCCTCATGTCATCAACATAGCAAGTGGAGAAGACATTGCAACGAAAATTATGGCATTTTCTCAGCAGGGGTCTAGATTTGTGTTTATTTTGTCTGCCACCGGTGCTGTTTCCACTGTCACACTTCGCCAACCTTCAACTTCAGGTGGCTCAGTCACATATGAGGGGCGTTTTGAGATATTGTGCCTGTCAGGCTCTTACTTGCTTACTGATAATGCTGGATCACGCAATCGAACTGGCGGACTAACTGTTTCCCTTGCTAGTCCTGACGGACGAGTCATTGGTGGAGGAGTTGGGGGAGTGCTCATTGCATCAAGTCCTGTTCAGGTGATAGTTGGAAGCTTTATATGGGGTGGATCAAGAACAAAGAAGAAAAAGGAAAGCACAGAAGGGGTAGAAGCTGCTATGGAGTCGGACCACCAACCGATTCACAATCCGGTTGCACTAAACAGCATTTCGCCGAATCAAAATCTTACTCCAACCCCATCTTTGAGTCCGTGGCCGGCGTCGCGTCCCTTGGACATGCGTAATTCCCATGTTGACATTGATTTAATGCGTGGGTGA 1002 0.504 MDHGDQMASYYMQQRGIPGSGAQPEFSAGIRSLSSPNLPFQSGIGSGGSIGSTIQLESSGISTHGVNVGAPPGVPPGEPVKRKRGRPRKYGTDGTVLALTPTSSSHPGAMTTPGQKRGRGRPPGTGKKQQLASLGEMISGSAGMGFTPHVINIASGEDIATKIMAFSQQGSRFVFILSATGAVSTVTLRQPSTSGGSVTYEGRFEILCLSGSYLLTDNAGSRNRTGGLTVSLASPDGRVIGGGVGGVLIASSPVQVIVGSFIWGGSRTKKKKESTEGVEAAMESDHQPIHNPVALNSISPNQNLTPTPSLSPWPASRPLDMRNSHVDIDLMRG* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2874 333 CDD DUF296 147 261 IPR005175 -
Amo04g2874 333 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 303 IPR039605 GO:0003680
Amo04g2874 333 SMART AT_hook_2 81 93 IPR017956 GO:0003677
Amo04g2874 333 SMART AT_hook_2 116 128 IPR017956 GO:0003677
Amo04g2874 333 MobiDBLite consensus disorder prediction 96 111 - -
Amo04g2874 333 SUPERFAMILY AF0104/ALDC/Ptd012-like 146 264 - -
Amo04g2874 333 Pfam Plants and Prokaryotes Conserved (PCC) domain 148 261 IPR005175 -
Amo04g2874 333 MobiDBLite consensus disorder prediction 297 318 - -
Amo04g2874 333 ProSiteProfiles PPC domain profile profile. 142 282 IPR005175 -
Amo04g2874 333 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 303 - -
Amo04g2874 333 MobiDBLite consensus disorder prediction 65 129 - -
Amo04g2874 333 Gene3D - 148 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2874 Amo-Chr4 103895938 103900453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2874 80 333 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 54.753 2.34e-76 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2874 - - gmx:100814615 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo04g2874 04 103895938 103900453 Amo02g0176 02 2004741 2009450 PCT
Amo02g0176 02 2004741 2009450 Amo04g2874 04 103895938 103900453 PCT