Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2825 GGTGCAAAGAATGGCTGCAAAAATAGACTTGATCAGAAGCATCAATCCAACCAAGCTGGCTTGGTCGTTGGTCATGGGTGGAACCAGAATGAAGTGTTTAGCTTGGAGATGGGTGATAGAATTCATGCAACGATATATAAGCCTGACTTGGATTTATTCAAGGAGAGGATAAAAAAGCATGCCATGACAACTGCTCATAAGTACAAGCTTAGCTTCTATACAAAGACAGAGGTGGAAGTCCTTCCAATCGAGACTTTCGCTTTTAACCCATTCAAATTTCGCCCCTTTGCTGAGCTTGAGGCAAATGCTCTAATGGATGGGAATTTGTTGTTTGATTACATAGGAGAGGTTGTTGGAAAGGAAGAGGCTATGGGGATGATTACATGCACGGAGTTGTATTATGCCTTTTGTTCCAGGAAGCACAAGATTAAATGTACATTGTTTGGAGAATTGGTGGACCAAGTGCTTCCACACCTCGAGCGAGATGATGGGGAGCCTTTCATAATGGTTGTTCAGCTCTTTAACACTTACTATGTCTCCAAATGTTACTTCAATCCAAACCTTCCCAAAGTTATTGACTTCAAAAAAAGGTGTTCTTTTTGGACTTTCTACAAATTGGCAGAGGAGGTTGTGCCCTGTTCGCAACGGATAACTCCTATTCAATCGCAGCCTCAATACTCTGTGGCAGATGAAATCAATGCAAGCATTGTTCCAATACGCACCATAGAGGGGGTTCTTAATATGACACAGGAAACCTCTTGCTGGATTGTGGGAAACATTGTGTCTTTAGAGGTCGGTAAAGATGACTGGTCCTATACGTCGTGTAAGACATGTCCAAAGAAAGTTCTAGAGAGCAAAGATAGGTACTGGTGTGATCATTGTAGGCGTGTAGGCTTCAAGGCTATGCTAAGGTATAGGCTGCAAGTAATCGTGACTGATGGAAGCGGTTGTATGAAGCTCCTTCTATGGAACAAAGAAGCAGAGCAAATGGTGGGAAAGGCTGCTGAGAAAATTAAGGAGTTATCTAAGTGGGAAAAAGGAGAGTCGTATCCTAAGTCCTTGGATACTATTGTTGACAAAAGGTTCTTATTCAAACTCAATATCACCTATAAGAATATTAATGCTGTTGAAGGGGTATACAGCGTTTTAAAGATTTCAGATGATGAGTACCTCATCATGTTGCGATTGGAACTAGAACTGAGTTGTGTTGAACAATTTATTGTTCAAACTAACATCTTGCCTTCAAATGATCTTGGTTCCTGCAGTGCTCTCAACATGTACCTAATACCTCTACAACTGAAACAGGATTCAGCAGTTGAGAGCAACTGTGATAGCTCCTATGAGACTCCAGCCAAGAGGTCCTCTCCTGATATAGGTGATGGCTCAACAGCAGAAGCAGTTGTGTCTGTAGATGTGCAAGCATCAGCTAACAAGACTTTTAAGAGGAATTTTATAGTGTTGGTGTGTTTAAAAAGTTGTGATGAGACAAATGTTTTCTTAGCATTCTAG 1509 0.4129 GAKNGCKNRLDQKHQSNQAGLVVGHGWNQNEVFSLEMGDRIHATIYKPDLDLFKERIKKHAMTTAHKYKLSFYTKTEVEVLPIETFAFNPFKFRPFAELEANALMDGNLLFDYIGEVVGKEEAMGMITCTELYYAFCSRKHKIKCTLFGELVDQVLPHLERDDGEPFIMVVQLFNTYYVSKCYFNPNLPKVIDFKKRCSFWTFYKLAEEVVPCSQRITPIQSQPQYSVADEINASIVPIRTIEGVLNMTQETSCWIVGNIVSLEVGKDDWSYTSCKTCPKKVLESKDRYWCDHCRRVGFKAMLRYRLQVIVTDGSGCMKLLLWNKEAEQMVGKAAEKIKELSKWEKGESYPKSLDTIVDKRFLFKLNITYKNINAVEGVYSVLKISDDEYLIMLRLELELSCVEQFIVQTNILPSNDLGSCSALNMYLIPLQLKQDSAVESNCDSSYETPAKRSSPDIGDGSTAEAVVSVDVQASANKTFKRNFIVLVCLKSCDETNVFLAF* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2825 502 Gene3D - 86 202 IPR012340 -
Amo04g2825 502 CDD RPA1_DBD_C 256 391 IPR013955 -
Amo04g2825 502 Pfam Replication factor-A C terminal domain 265 374 IPR013955 -
Amo04g2825 502 PANTHER REPLICATION FACTOR A 1, RFA1 62 392 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo04g2825 502 SUPERFAMILY Nucleic acid-binding proteins 239 395 IPR012340 -
Amo04g2825 502 Gene3D - 228 394 IPR012340 -
Amo04g2825 502 PANTHER BNAC07G49340D PROTEIN 62 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2825 Amo-Chr4 102944812 102947400 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2825 32 375 Core DNA Replication Machinery Family AT5G08020 24.359 4.03e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2825 - - adu:107463979 604.749