Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2824 ATGGCTGTGGTGAATCCTGTGCCTGCAACAACACAAAGGATGGGTTCTGTGAGGCGAGTTCAAGAGGGTGAAATTGTTGAGGAGCCTAATCAAGCTGTGGTAGTTGATGAACCAATCTATGTTGCTGTGTCAAAAGAAGTGAAAGAGAGCAAGCTGAATCTGATATGGGCGATTCAGAACTCTGGAGGAAGGAGGATTTGCATACTTCATGTTCATGTTCCTGCAACCAAGATCCCTTTGATGGGTGCTATGTTCCCTGCAAGTTCACTGAAAGAGCAGGAGGTTCGAGCATACCGGGATATTGAAAGACAAACCATGCATAAGACTCTCGATGAGTATCTTCGTATATGTCAACGGATGGGGGTGCAGGCGGAGAAAGTGCATAATGAACTGGACAACATTGAAAAAGGAATTGTAGAACTTGTCTCCCAACGTGGCATCCAAAGGCTTGTCATGGGAGCGGCATCGGACCGATCCCATTCTAGGAGAATGATGGACTTGAAATCTAAGAAAGCCATCTTTGTATGTGAGCAAGCTCCGGCATTTTGTCGGATACAGTTTATCTGCAAAGGGCACCTTATACACACAAGGGATCGCAGTTTGGGTGCAGATAATTTAGTTGCATCTCCTTTGGTACAACAAGTTCCAAACTCTGAAGCTGAACATCCAGTACTCCCGAGATCTCAATCTGTTCTTACTCCGGGCCAAAATCAAACTAGTCATCGTCGGGAGTTATTTCGCAAAGTAAGGTCTGCCAATGATGGTGTTGTAGGGGGCATTATGCATGATTCTTCTCCAGATAACTTCGAAGGGTTCTCAACTCCACCAAATAGGTTAGGTACTGATTTAAGTTCTGATGAGTCAGATAGGGTATCAAGGACAAGGAGTCCTTCAGCTTTGTCAGTGTGCTCCGATAGTGGTGCTGTTGACCCAATGTTGAGCCCAAATTCGGTTAGTGAGATTGCTGAGAATGTAGCAGAGTTGACTTTGAGCCATGCAATCAAAGAGGATCTTCATCATTCTTCTCCTCCTAGTGTACTGGATGGAGGAATGAATGATACTATATATGATCAACTTGAATTGGCTATGGCTGAGGCCGAGAGAGCCACACGAAACGCATATCAAGAAACATATAGGCGTGGGAAAGCTGAAAAGGAGGCCATTGAAGCTATGCGAAAGGCTAAAATCTCTGAAAGTTTATATGTAGAAGAGTTGAATCTGAGGAAAAGGGCAGAGGAAGAACTACAAAAAGAAAAAGAACAACTTCAAAATATGAAGATCCAGAGAGACAAAGTTGAGGAAGAACTCCAACTTGCACTGGATCAGAAGTCATCACTGGAGAGCCAAATTGCATCATCCGAACTTATGATAAAGGAGTATGAGCAGAAGATCATTTCTGCCGTGGATCTGTTACAAAGCTACAAGAACGAACGGGATGAGTTGCAGGTACAGCGTGATGAAGTGCTGAGAGAGGCCACGGAGTTGAGGAAAAAACAAGGAGAGGCCTCTGGCACTCACACACCTCAATTGTTCTCGGAGTTCTCTTTCCTTGAGATCGAACAAGCAACAAATAACTTTGATCAGTCCCTAAAGATAGGAGAAGGTGGATATGGAAGTATATTTAAAGGTATGTTGCGGCACACTGAGGTGGCTATAAAGATGTTGCACTCTGACAGCATGCAAGGACCCTTGGAGTTTCAACAAGAGGTTGATGTATTGAGCAAGTTAAGGCATCCAAATCTTATCACACTTGTTGGAGCCTGCCCAGAATCCTTTACTCTTATCTACGAGTATTTACCGAATGGGAGCCTTGAAGACCGTCTGGTTTGCAAGGATAACACACCTCCCTTGCCATGGCAAACTCGAATTCGCATTGCTGCAGAACTTTGTTCAGCTCTCATCTTCCTTCACTCAAGTAAACCGCACCGCATAGTGCACGGTGACTTGAAACCCTCTAACATTCTCCTTGATGCAAACCTTATTAGCAAGCTAAGCGACTTTGGAATCTGCCGCATATTATCTCGTCGCGAGGATTCGACTGATAACACTACAGAGTGTTGGAGAACCCACCCAAAGGGAACTTTTGTTTACATGGATCCGGAATTCCTTGCGTCCGGGGAACTTACTCCTAAGTCAGATGTTTATTCCTTTGGAATCATATTGATGAGATTGTTGACAGGGAGACCTGCCTTGGGAATAACAAAGGAAGTGTCCTATGCATTGGAAACCGGAAAGCTGAAATCTCTGTTGGATCCTTTAGCCGGAGACTGGCCATTTGTGCAAGCCGAACAATTGGCTCGCCTGGCCATGAGGTGTTGCGAGATGAATAGAAAGAACCGGCCGGATCTTTATTCCGATGTATGGAGGGTATTGGACCCCATGACAACTTCCTCTGGAGGCACACTAAGTCCTTCAGGGCTTTACCAACAAACACCATCATATTTCATTTGTCCAATCTTTCAGGAAGTAATGCGAGATCCGCATGTAGCTGCCGATGGCTTCACTTATGAAGCCGAGGCCATAAGAGGGTGGCTTGACAGTGGTCATGACGATTCGCCGATGACAAATTTGAAGCTTGCGCACCGCAATCTTGTTCCGAACCGCGCACTCAAGTCTGCAATCCATGACTGGCTTCAAAGTCACTGA 2646 0.4524 MAVVNPVPATTQRMGSVRRVQEGEIVEEPNQAVVVDEPIYVAVSKEVKESKLNLIWAIQNSGGRRICILHVHVPATKIPLMGAMFPASSLKEQEVRAYRDIERQTMHKTLDEYLRICQRMGVQAEKVHNELDNIEKGIVELVSQRGIQRLVMGAASDRSHSRRMMDLKSKKAIFVCEQAPAFCRIQFICKGHLIHTRDRSLGADNLVASPLVQQVPNSEAEHPVLPRSQSVLTPGQNQTSHRRELFRKVRSANDGVVGGIMHDSSPDNFEGFSTPPNRLGTDLSSDESDRVSRTRSPSALSVCSDSGAVDPMLSPNSVSEIAENVAELTLSHAIKEDLHHSSPPSVLDGGMNDTIYDQLELAMAEAERATRNAYQETYRRGKAEKEAIEAMRKAKISESLYVEELNLRKRAEEELQKEKEQLQNMKIQRDKVEEELQLALDQKSSLESQIASSELMIKEYEQKIISAVDLLQSYKNERDELQVQRDEVLREATELRKKQGEASGTHTPQLFSEFSFLEIEQATNNFDQSLKIGEGGYGSIFKGMLRHTEVAIKMLHSDSMQGPLEFQQEVDVLSKLRHPNLITLVGACPESFTLIYEYLPNGSLEDRLVCKDNTPPLPWQTRIRIAAELCSALIFLHSSKPHRIVHGDLKPSNILLDANLISKLSDFGICRILSRREDSTDNTTECWRTHPKGTFVYMDPEFLASGELTPKSDVYSFGIILMRLLTGRPALGITKEVSYALETGKLKSLLDPLAGDWPFVQAEQLARLAMRCCEMNRKNRPDLYSDVWRVLDPMTTSSGGTLSPSGLYQQTPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDSGHDDSPMTNLKLAHRNLVPNRALKSAIHDWLQSH* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2824 881 ProSiteProfiles Protein kinase domain profile. 526 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2824 881 SUPERFAMILY Protein kinase-like (PK-like) 506 783 IPR011009 -
Amo04g2824 881 Pfam Protein kinase domain 528 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2824 881 PANTHER OS02G0152300 PROTEIN 31 880 - -
Amo04g2824 881 CDD STK_N 38 191 - -
Amo04g2824 881 Gene3D HUPs 28 165 IPR014729 -
Amo04g2824 881 SMART Ubox_2 814 877 IPR003613 GO:0004842|GO:0016567
Amo04g2824 881 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672|GO:0006468
Amo04g2824 881 Gene3D Phosphorylase Kinase; domain 1 496 598 - -
Amo04g2824 881 Gene3D Transferase(Phosphotransferase) domain 1 599 800 - -
Amo04g2824 881 SMART serkin_6 526 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2824 881 Coils Coil 401 498 - -
Amo04g2824 881 ProSitePatterns Protein kinases ATP-binding region signature. 532 553 IPR017441 GO:0005524
Amo04g2824 881 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 49 162 - -
Amo04g2824 881 ProSiteProfiles U-box domain profile. 810 881 IPR003613 GO:0004842|GO:0016567
Amo04g2824 881 MobiDBLite consensus disorder prediction 259 307 - -
Amo04g2824 881 MobiDBLite consensus disorder prediction 218 243 - -
Amo04g2824 881 Coils Coil 356 376 - -
Amo04g2824 881 MobiDBLite consensus disorder prediction 267 282 - -
Amo04g2824 881 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 881 IPR013083 -
Amo04g2824 881 SUPERFAMILY RING/U-box 804 880 - -
Amo04g2824 881 PANTHER U-BOX KINASE FAMILY PROTEIN 31 880 - -
Amo04g2824 881 Pfam U-box domain 812 881 IPR003613 GO:0004842|GO:0016567
Amo04g2824 881 CDD RING-Ubox_WDSUB1_like 815 856 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2824 Amo-Chr4 102876323 102881649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2824 1 881 U-box Gene Family AT2G45910 50.388 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Amo04g2824 Pkinase 1.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2824 - - gmx:100807515 1308.51