Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2815 ATGCAATCTGCCGGCAGCGGTGGCTCGGGCCGGAACCCCTCGGCTGGCCGGGCGGCTTCGGCATCGCCGTCGTCGTCTTCCCAATTTAGCCTGGACTCATTGCATCAGCAGCAGCAGAAGATAGGTTCTAGGCAGTCATTTCCACATCAATTGCTAAAAAAACCAGAAGGAAGTGAAGCATTTTTTGCATATCAAACAGGGCTTCAAGGTGGATTTGGGACTAACAATTTCTCACCTTCTAATGCCATGCCTCAGCAGCCTCAAAAATTTGTTGATTTAGGTCAGCAGAGCTCCAGCCAGGGACAAGTTGCTGACCGGCAAATGCTCAATTACCAACAAGCATACCTTCAATATGCTCTGCAGGCTCAACAAAAATCTGCTTTGGCAATGCAGTCACAGAAACAATCTAAAATGGGGATCCCAGGCCCTTCATCTGTGAATGATCAGGACATGCATACTGGAAATCTGAAAATACAGGACCTTATGTCTATGCAAGCTGTTAATCAATCCCAAGCATCGTCCTCTAGGAATTCATCTGAACATTTTGCTCATGGGGAAAAGCAGATGGAGCAAGGACAGCAGCTAGCACTTGATCAGAAGAGTGAAGGAAAGCCTTCATCCCAAGGACCAGCCACTGGACACTTAATGCCGGGAAATAGTATGAGGCCACCTGTGCAAGCACCACCAATGCAGCAGAGCATGCTAAATATGTTGAAGGATCCATTACCATTTACTAAGACTGCTCAATATCAGGCTATGCAGGCATGGGCAAGAAATTTATCTGATCCTTCAAGATGTCTTAAGATGGCTCAGCTCATTCCGCAGATGCAATCAAGAACAGTTCCACAACCAAAGGCAAATGATACTAATGTTGGTACTCAGTCATTACCAGTCAGTGTTTCAAACCCACAGGCTAGTTCTCCAACAGTTGCAAGTGAGAACACAACACATACTAATTCATCTAATGATGCTTCTGCACAATCAAGTTCTGCTAAAGCAAAGCAGACAGGTCTATCTAACCATTTTGGCCCACCAATTAATGCCAGTATTGCTGGAAATTCCAGTGAAGTTGCATTGGCACAATTCAATCTTCATGGCAGAGACTCGCAAGGTTCTTTGAGGCAATCAGCAGTTAAAAATGGAATGTCTTCTATGCATCCGCAGCATTCTTCTGCAAGCTTAAACCTAGGTGCAGATCATCCTTTGAATGCAAAAACTTCATCATCTAGTTCAGAACCTGTGCAGATGCAGCACATCAGGCAATCAAATCAATCTGTTGTTCAGGATGGAGGTCTGTCAAACGAAGGGGGTTCTATAAATCATTCAAAATATCAAGGGGCACCATCTCAGATGCCTCAACAAAGAACTGCATTTACGAAACAACAGCTTCATGTTCTTAAAGCTCAGATACTTGCATTTAGACGACTGAAGAAAGGAGAAGGAACTCTTCCCCAAGAACTTCTTCGGGCCATCAGTCCACCACCTCTTGATTCACAAGTGCAGCAACCGGTTACTTCTGCAGGAGGGCAAAATCAAGACCAATCAGAAGTAACTGTGGCAGAACAGCCAAAGCAGATGGAGTCCATTGCCAAGGACTCACAATCTATCTCATCTATTAATGCAAAGGGTTCTTCAAAGCAGGAAGTCTTTGCTAGAGATGAGAAATCCACAACAACAATACATGTGCAAGCTATGCCTTTGGTGATAAAAGAACCTGCTGGAAAGGAAGAGCAACAATCTGTTGGTTGCTCTGCTATGTCGGACCAGGAAGGTGAACATGGAATTAGACAAATACCTGTTAGAAATGAGTCGGTGTTAGATAGGGGAAAGGCTATTGCAGCCCAAGCTTCTGTTTCTGAACAATTGCAAAATAATAAAACTGAACAAGCAAGCATTGTTGCGCAGCCAAAGGATGTGGGCCTCACCAGAAAATATCATGGACCACTATTTGATTTTCCTTTCTTCACCAGGAAACACGATTCCTTTGGTTCATCAATGATGCTAAACCATAATAATTTGTCACTGGCATATGATGTGAAAGAGCTTCTTTATGATGAAGGTGTGCAAGTCCTTAACAAGAAAAGGACAGAAAATTTAAAGAAGATTGAGGGTTTACTGGCAGTTAACTTAGATAGGAAAAGAATTAGGCCAGATCTTGTGTTGAAGTTGCAAATTGAAGAAAAAAAGCTTCGCCTTTTAGATCTACAGGCACGTTTAAGGGATGAGATTGATCAACATCAAAAAGAGATAATGGCAATGCCAGATAGGCCATATAGGAAATTTGTTAAGTTGTGCGAACGTCAGCGTATGGAACTTGCTAGACAAGTACAGGCATCACAGAAAGCTTTAAGGGAGAAGCAACTGAAATCTATATTCAATTGGCGCAAGAAGCTTCTTGAAGCACACTGGGGCATTCGTGACGCACGGACTGCTCGCAACCGGGGGGTGGCCAAGTATCACGAGAAGATGTTGAGAGAATTCTCGAAACGTAAGGATGATGACAGGAGCAAAAGGATGGAAGCCTTAAAAAACAATGATGTTGATAGGTACAGGGAGATGTTGCTGGAGCAGCAGATTAGTATCCCGGGTGATGCTGCAGAGAGATATGCTGTTCTTTCAACTTTCTTAACCCAGACTGAAGAATATCTACATAAATTAGGAAGTAAGATAACAGCTGCTAAGAGCCAACAGGAAGTGGAGGAGGCAGCAAAAGCTGCTGCAGCTGCTGCACGATTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGTCGCAGCAACTTGTGCTGGAGAGGAAGTGATGATTAGAAATCAGTTTATAGAGATGAATACTCCTAGAGACAGTTCATCTGTCAACAAGTATTACAGCCTTGCTCATGCTGTGAGTGAAAGGGTTGTAAGACAACCATCCATGTTACGAGCTGGAACATTGAGAGACTATCAAATGGTTGGTTTGCAATGGATGCTTTCTTTGTATAACAACAAATTAAATGGAATATTGGCAGATGAGATGGGTCTTGGTAAAACCGTTCAGGTCATGGCATTAATTGCGTACTTGATGGAATTTAAAGGGAACTATGGCCCACATCTTATAATAGTGCCAAATGCTGTTTTGGTTAACTGGAAGAGTGAGTTGCATACTTGGTTACCATCCGTGTCATGCATTTTTTATGTTGGAACAAAGGATACAAGATCAAAATTATTTTCTCAGGAGGTTATGGCTATGAAATTTAATGTCCTTGTGACTACTTATGAGTTCATCATGTATGACCGGTCAAAGCTTTCAAAAGTTGATTGGAAGTATATCGTAATTGATGAAGCACAGAGAATGAAGGATAGGGATTCAGTTCTAGCACGCGATCTTGACAGATACCGTTGTCAACGACGCTTGCTTCTGACAGGAACACCTTTGCAGAATGATTTGAAGGAACTCTGGTCACTTTTAAATTTACTTCTTCCAGAGGTTTTTGACAATAAGAAAGCCTTCCATGATTGGTTTTCAAAACCATTTCAAAAGGAAGGTCCAAATCAAAATGCAGAGGATGATTGGCTTGAAACAGAAAAGAAAGTCATCATTATCCATCGACTCCATCAGATTCTTGAGCCTTTCATGCTTAGGCGTCGCGTTGAAGATGTTGAAGGCTCTCTACCACCAAAGGTCTCCATAGTTTTACGATGTAAAATGTCAGCTGTCCAGAGTGCCATTTATGACTGGGTTAAATCCACTGGCACCCTTCGTGTTGATCCTGAGGATGAGAGAAGAAAGGTTTTGAAGAATCCACTCTACCAGGCAAAGCCTTATAAAACTTTAAATAACAGATGCATGGAGCTACGCAAAACCTGCAATCATCCAATGCTTAATTACCCATTTTTTGATGAATTTATGGATAGAGACTTTATTGTACAATCTTGTGGGAAGTTGTGGATTTTGGATAGGATCCTTATCAAACTTCAAAGAACTGGACATCGAGTTTTGCTGTTTAGTACCATGACAAAGCTCCTAGACATCTTGGAAGACTATCTGCAATGGCGGAGACTAGTTTACAGGAGAATTGATGGGACAACAAGTTTGGAAGACCGAGAATCAGCAATAATGGACTTCAATAGGCCTGATTCAGACTGTTTCATCTTCTTGCTTAGCATTAGAGCTGCTGGGAGAGGCCTTAATCTTCAGTCTGCTGACACAGTTGTCATTTACGATCCTGATCCAAATCCTAAAAATGAGGAGCAGGCTGTGGCCAGAGCTCATCGGATTGGACAAAAAAGGGAAGTCAAGGTTATCTACATGGAGGCTGTTGTTGACAAGATCTCTAGCCATCAGAAAGAGAACGAATTGAGAAGTGGAGGCCTTGTTGATATGGAGGATGAACTTGCTGGTAAGGATCGATATATGGGATCTATTGAGAGCCTCATAAGGAACAATATTCAACAATATAAGATAGACATGGCTGACGAGGTCATTAATGCTGGACGTTTTGATCAAAGAACAACACATGAAGAAAGACGTTCAACTTTGGAGACTTTATTACATGACGAGGAAAGATATCAAGAAACTGTTCATAATGTTCCGTCACTACAGGAGGTTAATCGCATGATTGCTAGAAGTGAAGAGGAAGTTGAACTGTTTGATCAAATGGACGAAGAACTGGATTGGAGTGAAGAGATGACACGGCATGATGAGGTGCCTAAATGGCTTCGAACCAGCACAAGAGAAGTGAATGCTGCTATTGCTGCTTTATCTAAAAGACCATCAAAGAACATTTTATTTGGTGGTAGTATGGGCATGGAATCTAGTGAATTGGGTTCTGAAAAGAGAAGAGGACGACCCAAGGGAAAAAAGCATCCTAATTATAAAGAGTTGGAGGATGATGATATAATTGAGTGCTCTGAAGAAAGCTCTGAGGAAAGAAATGGATATTCTGCACATGAAGGGGAGATAGGAAAATTTGAAGATGAAGTACATAGTGGGGGTGATGGAGCTAATCCCATGGAAAAAGATCAAGTCGAACATGGTCCACCTTTTAATGCTGGATATGAACTTCCTCGGTCTTTAGAAAATGCTAAAAATCACACAGTTGAAGAAGCTGGTACGAGAGGATCATCATTAGATAGTCAAATATTGACACATACAGTGACACCATCAGTTTACTCACGGAAATTTGGTTCCCTCTCTGCATTAGATGCCAAGCCAAGTTCCATTTCAAAAAGGGTAGATGAGTTAGAAGAAGGGGAAATTGCAATATCTGGTGGTTCTCACATGGATCATCAACAATGTAGAAGTTGGATTCATGATCGTGATGAAGGTGAGGATGAACAAGTTCTGCAGCAACCCAAGATCAAACGCAAACGTAGTCTACGTGTTCGACACCGTCCTGTCATCGAAAGGCCTGAGGACAAATCTGGCATTGAGATGGTTCCTCTTCAACGTGGAGAATCATCTCTTATTGCAGACAATAAATATCAAGGTCAAACAAGGACTGACCGAGAATCAAAATCACTTGTTGACAATAATGCCAGCAAGCATGATAAGGATGAATCTTCATTGGAAAATAAGAAAAATTTACCTTCAAGGAAAGCAGCTAATTCATTCAAATTACATGGCTCACCTAAGTCTAATCGTATGATCTGCTTGTCTGCTCCTTCAGAGGATGGTGGCGAACACCCTAAAGAAAGTTGGGAAGGAAAGCCTATCAACTCAGCTGGATCTTCAGCTCATGGCTCTAAGATGACCGAAATTATTCAGAGAAGATGCAAAAATGTAATTAGCAAATTCCAAAGGAGAATAGACAAGGAAGGCCAACAAATTGTACCTTTGCTATCAGATTTGTGGAAGAGGATGGAGAATTCTGGGTACACTGGCGGATCAGGGAACAGTTTGTTGGATCTACGAAAGATTGAGCAGCAGATTGATGCATTGGAGTATAATGGAGTAATGGAGCTTGTGTTTGATGTGCAGTTTATGTTGAGGAGTGCGATGCAATTTTATGGATACTCATATGAGGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTTTTTGATATCTTGAAAATTGCATTTCCTGATACGGACTTTGCAGAAGCAAAAGGTTCCCTTTCTTTCTCCGGCCAAATTGATTCCAATGCCATAACATCCCCTAGGCAAGGAAATGTTTGCCCAAGCAAGAGGCAAAGGACAATAAATGATGTGGAAACCGATCAATGCCCTGAACAAAAGGCTCCGAACCGTGGTTCCGGGTCTAACGGCGAAAAAGCCAGGAACAAAGGCCATCCATTGCAGAAGGAATTGAGACCTGGAAGCGGTAGTGGTAGTGCCCGGGAGCAATATCAGCAGAATAATTCTTCTGCATTAGTTCATCCAGGTGATCTGGTTGTATGCAAGAAGAAAAGAAATGACAGAGAAAAATTATTGGCGAAGCCTAGGACCACATCCGCCGGTCCTGTTTCACCGCCCAGTATGGGTAAGAATAGAAGTCCCGGGTCAGGTTCGACTCCTAAGGATGCGAGGGTGTTTCAACATACTTCAAATGTGCAAGGGCGGTTTAGCCAGCCATATCAGCTGTCAAATGGGTCTGGTGGGTTGGTTGGCTGGGCAAACCCGGTAAAGCGACTAAGAACAGATTGTGGGAAGAGGAGACCAAGCCATACATAG 6645 0.4239 MQSAGSGGSGRNPSAGRAASASPSSSSQFSLDSLHQQQQKIGSRQSFPHQLLKKPEGSEAFFAYQTGLQGGFGTNNFSPSNAMPQQPQKFVDLGQQSSSQGQVADRQMLNYQQAYLQYALQAQQKSALAMQSQKQSKMGIPGPSSVNDQDMHTGNLKIQDLMSMQAVNQSQASSSRNSSEHFAHGEKQMEQGQQLALDQKSEGKPSSQGPATGHLMPGNSMRPPVQAPPMQQSMLNMLKDPLPFTKTAQYQAMQAWARNLSDPSRCLKMAQLIPQMQSRTVPQPKANDTNVGTQSLPVSVSNPQASSPTVASENTTHTNSSNDASAQSSSAKAKQTGLSNHFGPPINASIAGNSSEVALAQFNLHGRDSQGSLRQSAVKNGMSSMHPQHSSASLNLGADHPLNAKTSSSSSEPVQMQHIRQSNQSVVQDGGLSNEGGSINHSKYQGAPSQMPQQRTAFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRAISPPPLDSQVQQPVTSAGGQNQDQSEVTVAEQPKQMESIAKDSQSISSINAKGSSKQEVFARDEKSTTTIHVQAMPLVIKEPAGKEEQQSVGCSAMSDQEGEHGIRQIPVRNESVLDRGKAIAAQASVSEQLQNNKTEQASIVAQPKDVGLTRKYHGPLFDFPFFTRKHDSFGSSMMLNHNNLSLAYDVKELLYDEGVQVLNKKRTENLKKIEGLLAVNLDRKRIRPDLVLKLQIEEKKLRLLDLQARLRDEIDQHQKEIMAMPDRPYRKFVKLCERQRMELARQVQASQKALREKQLKSIFNWRKKLLEAHWGIRDARTARNRGVAKYHEKMLREFSKRKDDDRSKRMEALKNNDVDRYREMLLEQQISIPGDAAERYAVLSTFLTQTEEYLHKLGSKITAAKSQQEVEEAAKAAAAAARLQGLSEEEVRVAATCAGEEVMIRNQFIEMNTPRDSSSVNKYYSLAHAVSERVVRQPSMLRAGTLRDYQMVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIFYVGTKDTRSKLFSQEVMAMKFNVLVTTYEFIMYDRSKLSKVDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFHDWFSKPFQKEGPNQNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCKMSAVQSAIYDWVKSTGTLRVDPEDERRKVLKNPLYQAKPYKTLNNRCMELRKTCNHPMLNYPFFDEFMDRDFIVQSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEDYLQWRRLVYRRIDGTTSLEDRESAIMDFNRPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKENELRSGGLVDMEDELAGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRSTLETLLHDEERYQETVHNVPSLQEVNRMIARSEEEVELFDQMDEELDWSEEMTRHDEVPKWLRTSTREVNAAIAALSKRPSKNILFGGSMGMESSELGSEKRRGRPKGKKHPNYKELEDDDIIECSEESSEERNGYSAHEGEIGKFEDEVHSGGDGANPMEKDQVEHGPPFNAGYELPRSLENAKNHTVEEAGTRGSSLDSQILTHTVTPSVYSRKFGSLSALDAKPSSISKRVDELEEGEIAISGGSHMDHQQCRSWIHDRDEGEDEQVLQQPKIKRKRSLRVRHRPVIERPEDKSGIEMVPLQRGESSLIADNKYQGQTRTDRESKSLVDNNASKHDKDESSLENKKNLPSRKAANSFKLHGSPKSNRMICLSAPSEDGGEHPKESWEGKPINSAGSSAHGSKMTEIIQRRCKNVISKFQRRIDKEGQQIVPLLSDLWKRMENSGYTGGSGNSLLDLRKIEQQIDALEYNGVMELVFDVQFMLRSAMQFYGYSYEVRTEARKVHDLFFDILKIAFPDTDFAEAKGSLSFSGQIDSNAITSPRQGNVCPSKRQRTINDVETDQCPEQKAPNRGSGSNGEKARNKGHPLQKELRPGSGSGSAREQYQQNNSSALVHPGDLVVCKKKRNDREKLLAKPRTTSAGPVSPPSMGKNRSPGSGSTPKDARVFQHTSNVQGRFSQPYQLSNGSGGLVGWANPVKRLRTDCGKRRPSHT* 2215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2815 2214 MobiDBLite consensus disorder prediction 1762 1776 - -
Amo04g2815 2214 MobiDBLite consensus disorder prediction 1820 1850 - -
Amo04g2815 2214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 958 1205 IPR027417 -
Amo04g2815 2214 CDD SF2_C_SNF 1302 1427 - -
Amo04g2815 2214 MobiDBLite consensus disorder prediction 2143 2191 - -
Amo04g2815 2214 MobiDBLite consensus disorder prediction 1629 1663 - -
Amo04g2815 2214 SMART ultradead3 971 1160 IPR014001 -
Amo04g2815 2214 MobiDBLite consensus disorder prediction 368 455 - -
Amo04g2815 2214 MobiDBLite consensus disorder prediction 2064 2080 - -
Amo04g2815 2214 MobiDBLite consensus disorder prediction 166 228 - -
Amo04g2815 2214 Gene3D - 777 850 - -
Amo04g2815 2214 MobiDBLite consensus disorder prediction 2034 2056 - -
Amo04g2815 2214 MobiDBLite consensus disorder prediction 192 214 - -
Amo04g2815 2214 Gene3D - 966 1214 IPR038718 -
Amo04g2815 2214 Coils Coil 1523 1543 - -
Amo04g2815 2214 Pfam Helicase conserved C-terminal domain 1306 1417 IPR001650 -
Amo04g2815 2214 Coils Coil 725 749 - -
Amo04g2815 2214 MobiDBLite consensus disorder prediction 1 46 - -
Amo04g2815 2214 MobiDBLite consensus disorder prediction 495 545 - -
Amo04g2815 2214 Pfam SNF2-related domain 978 1283 IPR000330 GO:0005524|GO:0140658
Amo04g2815 2214 Gene3D - 1215 1426 IPR027417 -
Amo04g2815 2214 MobiDBLite consensus disorder prediction 1587 1678 - -
Amo04g2815 2214 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 987 1152 IPR014001 -
Amo04g2815 2214 MobiDBLite consensus disorder prediction 491 554 - -
Amo04g2815 2214 SUPERFAMILY Bromodomain 1958 2017 IPR036427 GO:0005515
Amo04g2815 2214 Gene3D - 1906 2035 IPR036427 GO:0005515
Amo04g2815 2214 SMART bromo_6 1908 2019 IPR001487 GO:0005515
Amo04g2815 2214 MobiDBLite consensus disorder prediction 277 347 - -
Amo04g2815 2214 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1307 1484 IPR001650 -
Amo04g2815 2214 MobiDBLite consensus disorder prediction 2101 2116 - -
Amo04g2815 2214 PANTHER SNF2/RAD54 HELICASE FAMILY 30 2134 - -
Amo04g2815 2214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1209 1547 IPR027417 -
Amo04g2815 2214 MobiDBLite consensus disorder prediction 132 151 - -
Amo04g2815 2214 MobiDBLite consensus disorder prediction 1762 1906 - -
Amo04g2815 2214 MobiDBLite consensus disorder prediction 2034 2196 - -
Amo04g2815 2214 MobiDBLite consensus disorder prediction 1788 1802 - -
Amo04g2815 2214 SMART QLQ_2 456 493 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo04g2815 2214 MobiDBLite consensus disorder prediction 2121 2137 - -
Amo04g2815 2214 MobiDBLite consensus disorder prediction 1 54 - -
Amo04g2815 2214 SMART helicmild6 1333 1417 IPR001650 -
Amo04g2815 2214 ProSiteProfiles QLQ domain profile. 457 493 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo04g2815 2214 PANTHER ATP-DEPENDENT HELICASE BRM 30 2134 IPR031056 GO:0006338|GO:0006355|GO:0008094|GO:0040029
Amo04g2815 2214 Pfam QLQ 457 491 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2815 Amo-Chr4 102596248 102607340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2815 957 1458 RAD5 or RAD16-like Gene Family AT1G02670 25.436 6.27e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo04g2815 SNF2_N 2.1e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2815 - - gmx:100811608 3197.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo04g2815 04 102596248 102607340 Amo02g0134 02 1505767 1516475 PCT
Amo02g0134 02 1505767 1516475 Amo04g2815 04 102596248 102607340 PCT